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Conference Papers Year : 2010

Uniform and non-uniform random generation of RNA secondary structures with pseudoknots

Abstract

We give an efficient algorithm to generate random RNA secondary structures with pseudoknots, either uniformly or non uniformly in a controllable fashion. Although we consider a restrictive class of pseudoknots, the class of {\em simple recursive pseudoknots}, it turns out that most of the known real RNA pseudoknotted secondary structures in the biological databases belong to this class.
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Dates and versions

inria-00543315 , version 1 (06-12-2010)

Identifiers

  • HAL Id : inria-00543315 , version 1

Cite

Cédric Saule, Claire Wallon, Alain Denise. Uniform and non-uniform random generation of RNA secondary structures with pseudoknots. GASCOM, Sep 2010, Montreal, Canada. ⟨inria-00543315⟩
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