CRISPI: a CRISPR Interactive database - Inria - Institut national de recherche en sciences et technologies du numérique Access content directly
Journal Articles Bioinformatics Year : 2009

CRISPI: a CRISPR Interactive database

Abstract

The CRISPR genomic structures (Clustered Regularly Interspaced Short Palindromic Repeats) form a family of repeats that is largely present in archaea and frequent in bacteria. On the basis of a formal model of CRISPR using very few parameters, a systematic study of all their occurrences in all available genomes of Archaea and Bacteria has been carried out. This has resulted in a relational database, CRISPI, which also includes a complete repertory of associated CRISPR-associated genes (CAS). A userfriendly web interface with many graphical tools and functions allows users to extract results, find CRISPR in personal sequences or calculate sequence similarity with spacers.
Fichier principal
Vignette du fichier
crispri.pdf (359.45 Ko) Télécharger le fichier
Origin : Files produced by the author(s)
Loading...

Dates and versions

inria-00438512 , version 1 (07-02-2011)

Identifiers

Cite

Christine Rousseau, Mathieu Gonnet, Marc Le Romancer, Jacques Nicolas. CRISPI: a CRISPR Interactive database. Bioinformatics, 2009, 25 (24), pp.3317-3318. ⟨10.1093/bioinformatics/btp586⟩. ⟨inria-00438512⟩
361 View
432 Download

Altmetric

Share

Gmail Facebook X LinkedIn More