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Journal Articles Proteins: Structure, Function, and Genetics Year : 2005

Docking essential dynamics eigenstructures

Diana Mustard
  • Function : Author

Abstract

This article describes our attempts to dock the targets in CAPRI Rounds 3-5 using Hex 4.2, and it introduces a novel essential dynamics approach to generate multiple feasible conformations for docking. In the blind trial, the basic Hex algorithm found 1 high-accuracy solution for CAPRI Target 12, and several further medium- and low-accuracy solutions for Targets 11, 12, 13, and 14. Subsequent a posteriori docking of the targets using essential dynamics eigenstructures was found to give consistently better predictions than rigidly docking only the unbound or model-built starting structures. Some suggestions to improve this promising new approach are presented.

Dates and versions

inria-00434271 , version 1 (21-11-2009)

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Diana Mustard, David Ritchie. Docking essential dynamics eigenstructures. Proteins: Structure, Function, and Genetics, 2005, 60, pp.269-274. ⟨10.1002/prot.20569⟩. ⟨inria-00434271⟩
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