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Conference Papers Year : 2007

Graph Rewriting and Strategies for Modeling Biochemical Networks

Abstract

In this paper, we present a rewriting framework for modeling molecular complexes, biochemical reaction rules, and generation of biochemical networks based on the representation of molecular complexes as a particular type of multigraphs with ports called molecular graphs. The advantage of this approach is to obtain for free a rewriting calculus which allows defining at the same level transformation rules and strategies for modeling rule selection and application, in order to prototype network generation.
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Dates and versions

inria-00146362 , version 1 (14-05-2007)
inria-00146362 , version 2 (03-07-2007)
inria-00146362 , version 3 (12-11-2007)

Identifiers

  • HAL Id : inria-00146362 , version 3

Cite

Oana Andrei, Hélène Kirchner. Graph Rewriting and Strategies for Modeling Biochemical Networks. International Workshop on Natural Computing and Applications - NCA 2007, Sep 2007, Timisoara, Romania. ⟨inria-00146362v3⟩
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