Computer analysis of multiple repeats in bacteria - Inria - Institut national de recherche en sciences et technologies du numérique Access content directly
Conference Papers Year : 2004

Computer analysis of multiple repeats in bacteria

Abstract

Motivation: The presence of repeated sequences is a well-known feature of bacterial genomes and interpretation and classification of those repeats is an actual problem. Results: We described a method for computing multiple repeats, that is sequences that have multiple (two or more) occurrences in a genome. In order to identify multiple repeats in bacteria genomes, we apply the YASS software (Noe et Kucherov) and developed a novel algorithm for multiple repeat clusterization. Exhaustive computation and analysis of those clusters of repeated sequences in bacteria is the subject of the present work.

Domains

Other [cs.OH]
No file

Dates and versions

inria-00100088 , version 1 (26-09-2006)

Identifiers

  • HAL Id : inria-00100088 , version 1

Cite

Alexey Vitreschak, Laurent Noé, Gregory Kucherov. Computer analysis of multiple repeats in bacteria. The fourth International Conference on Bioinformatics of Genome Regulation and Structure - BGRS'2004, 2004, Novosibirsk, Russia, 5 p. ⟨inria-00100088⟩
70 View
0 Download

Share

Gmail Facebook Twitter LinkedIn More