BlastMultAl, a Blast Extension for Similarity Searching with Alignment Graphs - Inria - Institut national de recherche en sciences et technologies du numérique Access content directly
Reports (Research Report) Year : 1996

BlastMultAl, a Blast Extension for Similarity Searching with Alignment Graphs

Pierre Nicodème
  • Function : Author

Abstract

We describe a new method of processing similarity queries of a proteic multiple alignment with a set (database) of protein sequences, or similarity queries of a protein sequence with a set of protein alignments. We use a representation of multiple alignments as alignment-graphs. Comparisons with different classical methods is made. This new method allows the detection of subtle similarities which are not found by the other methods. It has direct applications for similarities querying with the database of protein domains ProDom.

Domains

Other [cs.OH]
Fichier principal
Vignette du fichier
RR-2911.pdf (758.99 Ko) Télécharger le fichier

Dates and versions

inria-00073785 , version 1 (24-05-2006)

Identifiers

  • HAL Id : inria-00073785 , version 1

Cite

Pierre Nicodème. BlastMultAl, a Blast Extension for Similarity Searching with Alignment Graphs. [Research Report] RR-2911, INRIA. 1996. ⟨inria-00073785⟩
29 View
77 Download

Share

Gmail Facebook Twitter LinkedIn More