The paper describes the Hippo-CPS tool in the verification of Petri net-based cyber-physical systems. In particular, verification of the key properties such as boundedness, safeness and liveness is presented and discussed. Hippo-CPS allows for analysis of the control part of the CPS with the set of various algorithms (such as reachability tree exploration or place invariants computation) giving the designer an opportunity to select the most suitable technique. Each method is based on the theoretical background (with adequate algorithms, theorems, and proofs, described in other Authors’ works). Moreover, the efficiency and effectiveness of the presented methods were verified experimentally.