Every year, millions of patients regain consciousness during surgery and can potentially suffer from post-traumatic disorders. We recently showed that the detection of motor activity during a median nerve stimulation from electroencephalographic (EEG) signals could be used to alert the medical staff that a patient is waking up and trying to move under general anesthesia [1], [2]. In this work, we measure the accuracy and false positive rate in detecting motor imagery of several deep learning models (EEGNet, deep convolutional network and shallow convolutional network) directly trained on filtered EEG data. We compare them with efficient non-deep approaches, namely, a linear discriminant analysis based on common spatial patterns, the minimum distance to Riemannian mean algorithm applied to covariance matrices, a logistic regression based on a tangent space projection of covariance matrices (TS+LR). The EEGNet improves significantly the classification performance comparing to other classifiers (p-value < 0.01); moreover it outperforms the best non-deep clas-sifier (TS+LR) for 7.2% of accuracy. This approach promises to improve intraoperative awareness detection during general anesthesia.