The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou
,
Yuxiang Jiang
,
Timothy Bergquist
,
Alexandra Lee
,
Balint Kacsoh
,
Alex Crocker
,
Kimberley Lewis
,
George Georghiou
,
Huy Nguyen
(1)
,
Md Nafiz Hamid
,
Larry Davis
,
Tunca Dogan
(2)
,
Volkan Atalay
,
Ahmet Rifaioglu
,
Alperen Dalkiran
,
Rengul Cetin Atalay
,
Chengxin Zhang
,
Rebecca Hurto
,
Peter Freddolino
,
Yang Zhang
,
Prajwal Bhat
,
Fran Supek
,
Jose Fernandez
(3)
,
Branislava Gemovic
,
Vladimir Perovic
,
Radoslav Davidović
(4)
,
Neven Sumonja
,
Nevena Veljkovic
,
Ehsaneddin Asgari
,
Mohammad R.K. Mofrad
,
Giuseppe Profiti
(5)
,
Castrense Savojardo
,
Pier Luigi Martelli
,
Rita Casadio
(5)
,
Florian Boecker
,
Heiko Schoof
(6)
,
Indika Kahanda
,
Natalie Thurlby
,
Alice C Mchardy
(7)
,
Alexandre Renaux
(8)
,
Rabie Saidi
(9)
,
Julian Gough
(10)
,
Alex Freitas
,
Magdalena Antczak
,
Fabio Fabris
,
Mark Wass
,
Jie Hou
,
Jianlin Cheng
(11)
,
Zheng Wang
(12)
,
Alfonso Romero
(13)
,
Alberto Paccanaro
,
Haixuan Yang
,
Tatyana Goldberg
(14)
,
Chenguang Zhao
,
Liisa Holm
,
Petri Törönen
,
Alan J. Medlar
(15)
,
Elaine Zosa
,
Itamar Borukhov
,
Ilya Novikov
,
Angela Wilkins
,
Olivier Lichtarge
(16)
,
Po-Han Chi
,
Wei-Cheng Tseng
,
Michal Linial
,
Peter Rose
,
Christophe Dessimoz
(17)
,
Vedrana Vidulin
,
Saso Dzeroski
(18)
,
Ian Sillitoe
(19)
,
Sayoni Das
,
Jonathan Gill Lees
,
David Jones
,
Cen Wan
,
Domenico Cozzetto
,
Rui Fa
,
Mateo Torres
,
Alex Warwick Vesztrocy
,
Jose Manuel Rodriguez
,
Michael Tress
(20)
,
Marco Frasca
,
Marco Notaro
,
Giuliano Grossi
,
Alessandro Petrini
(21)
,
Matteo Re
,
Giorgio Valentini
(21)
,
Marco Mesiti
(22)
,
Daniel S. Roche
(23)
,
Jonas Reeb
,
David Ritchie
,
Sabeur Aridhi
(24)
,
Seyed Ziaeddin Alborzi
(24)
,
Marie-Dominique Devignes
(24)
,
da Chen Emily Koo
,
Richard Bonneau
,
Vladimir Gligorijević
,
Meet Barot
,
Hai Fang
,
Stefano Toppo
,
Enrico Lavezzo
(25)
,
Marco Falda
,
Michele Berselli
,
Silvio C.E. Tosatto
(26)
,
Marco Carraro
,
Damiano Piovesan
(26)
,
Hafeez Ur Rehman
,
Qizhong Mao
,
Shanshan Zhang
,
Slobodan Vucetic
,
Gage Black
,
Dane Jo
,
Erica Suh
,
Jonathan Dayton
,
Dallas Larsen
,
Ashton Omdahl
,
Liam Mcguffin
,
Danielle Brackenridge
,
Patricia Babbitt
,
Jeffrey Yunes
,
Paolo Fontana
,
Feng Zhang
,
Shanfeng Zhu
,
Ronghui You
,
Zihan Zhang
,
Suyang Dai
,
Shuwei Yao
,
Weidong Tian
,
Renzhi Cao
,
Caleb Chandler
,
Miguel Amezola
,
Devon Johnson
,
Jia-Ming Chang
(27)
,
Wen-Hung Liao
,
Yi-Wei Liu
(28)
,
Stefano Pascarelli
,
Yotam Frank
,
Robert Hoehndorf
,
Maxat Kulmanov
,
Imane Boudellioua
,
Gianfranco Politano
,
Stefano Di Carlo
(29)
,
Alfredo Benso
(30)
,
Kai Hakala
,
Filip Ginter
(31)
,
Farrokh Mehryary
,
Suwisa Kaewphan
,
Jari Björne
,
Hans Moen
,
Martti E.E. Tolvanen
,
Tapio Salakoski
(32)
,
Daisuke Kihara
(33)
,
Aashish Jain
,
Tomislav Šmuc
,
Adrian M Altenhoff
(34)
,
Asa Ben-Hur
(35)
,
Burkhard Rost
(14)
,
Steven Brenner
,
Christine Orengo
(19)
,
Constance Jeffery
,
Giovanni Bosco
,
Deborah Hogan
,
Maria Martin
,
Claire O’donovan
,
Sean Mooney
(36)
,
Casey Greene
,
Predrag Radivojac
,
Iddo Friedberg
1
ISU -
Iowa State University
2 European Bioinformatics Institute
3 EPM - École Polytechnique de Montréal
4 Vinča Institute of Nuclear Sciences
5 UNIBO - Alma Mater Studiorum Università di Bologna = University of Bologna
6 MPIPZ - Max Planck Institute for Plant Breeding Research
7 European Virus Bioinformatics Center [Jena]
8 ULB - Université libre de Bruxelles
9 LIMOS - Laboratoire d'Informatique, de Modélisation et d'optimisation des Systèmes
10 Department of Computer Science
11 Department of Computer Science [Columbia]
12 YSPH - Yale School of Public Health
13 Departamento de Geometría y Topología
14 Tumor Biology Center
15 Centre for Nephrology [London, UK]
16 BCM - Baylor College of Medicine
17 Department of Computer Science
18 Department of Knowledge Technologies
19 UCL - University College of London [London]
20 CNIO - Spanish National Cancer Research Center
21 Dipartimento di Informatica
22 Dipartimento di Scienze dell'Informazione [Milano]
23 United States Naval Academy
24 CAPSID - Computational Algorithms for Protein Structures and Interactions
25 Department of Molecular Medicine
26 Unipd - Università degli Studi di Padova = University of Padua
27 CRG - Centro de Regulación Genómica
28 Physics Department
29 DAUIN - Dipartimento di Automatica e Informatica [Torino]
30 Polito - Politecnico di Torino = Polytechnic of Turin
31 University of Turku
32 Bioinformatics Laboratory
33 TTIC - Toyota Technological Institute at Chicago [Chicago]
34 SIB - Swiss Institute of Bioinformatics [Lausanne]
35 Department of Computer Science [Colorado State University]
36 CPIB - Centre for Plant Integrative Biology [Nothingham]
2 European Bioinformatics Institute
3 EPM - École Polytechnique de Montréal
4 Vinča Institute of Nuclear Sciences
5 UNIBO - Alma Mater Studiorum Università di Bologna = University of Bologna
6 MPIPZ - Max Planck Institute for Plant Breeding Research
7 European Virus Bioinformatics Center [Jena]
8 ULB - Université libre de Bruxelles
9 LIMOS - Laboratoire d'Informatique, de Modélisation et d'optimisation des Systèmes
10 Department of Computer Science
11 Department of Computer Science [Columbia]
12 YSPH - Yale School of Public Health
13 Departamento de Geometría y Topología
14 Tumor Biology Center
15 Centre for Nephrology [London, UK]
16 BCM - Baylor College of Medicine
17 Department of Computer Science
18 Department of Knowledge Technologies
19 UCL - University College of London [London]
20 CNIO - Spanish National Cancer Research Center
21 Dipartimento di Informatica
22 Dipartimento di Scienze dell'Informazione [Milano]
23 United States Naval Academy
24 CAPSID - Computational Algorithms for Protein Structures and Interactions
25 Department of Molecular Medicine
26 Unipd - Università degli Studi di Padova = University of Padua
27 CRG - Centro de Regulación Genómica
28 Physics Department
29 DAUIN - Dipartimento di Automatica e Informatica [Torino]
30 Polito - Politecnico di Torino = Polytechnic of Turin
31 University of Turku
32 Bioinformatics Laboratory
33 TTIC - Toyota Technological Institute at Chicago [Chicago]
34 SIB - Swiss Institute of Bioinformatics [Lausanne]
35 Department of Computer Science [Colorado State University]
36 CPIB - Centre for Plant Integrative Biology [Nothingham]
Naihui Zhou
- Function : Author
Yuxiang Jiang
- Function : Author
Timothy Bergquist
- Function : Author
Alexandra Lee
- Function : Author
Balint Kacsoh
- Function : Author
Alex Crocker
- Function : Author
Kimberley Lewis
- Function : Author
George Georghiou
- Function : Author
Md Nafiz Hamid
- Function : Author
Larry Davis
- Function : Author
Volkan Atalay
- Function : Author
Ahmet Rifaioglu
- Function : Author
Alperen Dalkiran
- Function : Author
Rengul Cetin Atalay
- Function : Author
Chengxin Zhang
- Function : Author
Rebecca Hurto
- Function : Author
Peter Freddolino
- Function : Author
Yang Zhang
- Function : Author
- PersonId : 757354
- ORCID : 0000-0003-4102-2671
Prajwal Bhat
- Function : Author
Fran Supek
- Function : Author
Branislava Gemovic
- Function : Author
Vladimir Perovic
- Function : Author
Radoslav Davidović
- Function : Author
- PersonId : 792609
- ORCID : 0000-0002-6097-6203
Neven Sumonja
- Function : Author
Nevena Veljkovic
- Function : Author
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- ORCID : 0000-0001-6562-5800
Ehsaneddin Asgari
- Function : Author
Mohammad R.K. Mofrad
- Function : Author
Castrense Savojardo
- Function : Author
Pier Luigi Martelli
- Function : Author
Florian Boecker
- Function : Author
Indika Kahanda
- Function : Author
Natalie Thurlby
- Function : Author
Rabie Saidi
- Function : Author
- PersonId : 867520
Alex Freitas
- Function : Author
Magdalena Antczak
- Function : Author
Fabio Fabris
- Function : Author
Mark Wass
- Function : Author
Jie Hou
- Function : Author
Alberto Paccanaro
- Function : Author
Haixuan Yang
- Function : Author
Chenguang Zhao
- Function : Author
Liisa Holm
- Function : Author
Petri Törönen
- Function : Author
Elaine Zosa
- Function : Author
- PersonId : 798804
- ORCID : 0000-0003-2482-0663
Itamar Borukhov
- Function : Author
Ilya Novikov
- Function : Author
Angela Wilkins
- Function : Author
Po-Han Chi
- Function : Author
Wei-Cheng Tseng
- Function : Author
Michal Linial
- Function : Author
Peter Rose
- Function : Author
Vedrana Vidulin
- Function : Author
Sayoni Das
- Function : Author
Jonathan Gill Lees
- Function : Author
David Jones
- Function : Author
Cen Wan
- Function : Author
Domenico Cozzetto
- Function : Author
Rui Fa
- Function : Author
Mateo Torres
- Function : Author
Alex Warwick Vesztrocy
- Function : Author
Jose Manuel Rodriguez
- Function : Author
Marco Frasca
- Function : Author
Marco Notaro
- Function : Author
Giuliano Grossi
- Function : Author
Matteo Re
- Function : Author
Jonas Reeb
- Function : Author
David Ritchie
- Function : Author
- PersonId : 1609
- IdHAL : david-ritchie
- ORCID : 0000-0002-0906-7354
- IdRef : 172270383
Sabeur Aridhi
- Function : Author
- PersonId : 16269
- IdHAL : sabeur-aridhi
- ORCID : 0000-0002-3657-3762
- IdRef : 17650513X
Seyed Ziaeddin Alborzi
- Function : Author
- PersonId : 971733
Marie-Dominique Devignes
- Function : Author
- PersonId : 742369
- IdHAL : mddevignes
- ORCID : 0000-0002-0399-8713
- IdRef : 134215001
da Chen Emily Koo
- Function : Author
Richard Bonneau
- Function : Author
Vladimir Gligorijević
- Function : Author
Meet Barot
- Function : Author
Hai Fang
- Function : Author
Stefano Toppo
- Function : Author
Marco Falda
- Function : Author
Michele Berselli
- Function : Author
Marco Carraro
- Function : Author
Damiano Piovesan
- Function : Author
- PersonId : 791665
- ORCID : 0000-0001-8210-2390
Hafeez Ur Rehman
- Function : Author
Qizhong Mao
- Function : Author
Shanshan Zhang
- Function : Author
- PersonId : 798805
- ORCID : 0000-0002-9033-3786
Slobodan Vucetic
- Function : Author
Gage Black
- Function : Author
Dane Jo
- Function : Author
Erica Suh
- Function : Author
Jonathan Dayton
- Function : Author
Dallas Larsen
- Function : Author
Ashton Omdahl
- Function : Author
Liam Mcguffin
- Function : Author
Danielle Brackenridge
- Function : Author
Patricia Babbitt
- Function : Author
Jeffrey Yunes
- Function : Author
Paolo Fontana
- Function : Author
Feng Zhang
- Function : Author
- PersonId : 936796
Shanfeng Zhu
- Function : Author
Ronghui You
- Function : Author
Zihan Zhang
- Function : Author
Suyang Dai
- Function : Author
Shuwei Yao
- Function : Author
Weidong Tian
- Function : Author
Renzhi Cao
- Function : Author
Caleb Chandler
- Function : Author
Miguel Amezola
- Function : Author
Devon Johnson
- Function : Author
Wen-Hung Liao
- Function : Author
Stefano Pascarelli
- Function : Author
Yotam Frank
- Function : Author
Robert Hoehndorf
- Function : Author
Maxat Kulmanov
- Function : Author
Imane Boudellioua
- Function : Author
Gianfranco Politano
- Function : Author
Kai Hakala
- Function : Author
Farrokh Mehryary
- Function : Author
Suwisa Kaewphan
- Function : Author
Jari Björne
- Function : Author
Hans Moen
- Function : Author
Martti E.E. Tolvanen
- Function : Author
Daisuke Kihara
- Function : Author
- PersonId : 765070
- ORCID : 0000-0003-4091-6614
- IdRef : 155148435
Aashish Jain
- Function : Author
Tomislav Šmuc
- Function : Author
Steven Brenner
- Function : Author
Constance Jeffery
- Function : Author
Giovanni Bosco
- Function : Author
Deborah Hogan
- Function : Author
Maria Martin
- Function : Author
Claire O’donovan
- Function : Author
Casey Greene
- Function : Author
Predrag Radivojac
- Function : Author
Iddo Friedberg
- Function : Author