This paper presents HydroShoot, a leaf-based functional-structural plant model (FSPM) that simulates gas-exchange rates of complex plant canopies under water deficit conditions. HydroShoot is built assuming that simulating both the hydraulic structure of the shoot together with the energy budget of individual leaves is the asset for successfully scaling-up leaf to canopy gas-exchange rates. HydroShoot includes three interacting modules: hydraulic which calculates the distribution of xylem water potential across shoot hydraulic segments, energy which calculates the complete energy budget of individual leaves, and exchange which calculates net carbon assimilation and transpiration rates of individual leaves. HydroShoot was evaluated on virtual and real grapevines having strongly contrasted canopies, under well-watered and water deficit conditions. It captured accurately the impact of canopy architecture and soil water status on plant-scale gas-exchange rates and leaf-scale temperature and water potential. Both shoot hydraulic structure and leaf energy budget simulations were, as postulated, required to adequately scaling-up leaf to canopy gas-exchange rates. Notwithstanding, simulating shoot hydraulic structure was found more necessary to adequately performing this scaling task than simulating leaf energy budget. That is, the intra- canopy variability of leaf water potential was a better predictor of the reduction of whole plant gas-exchange rates under water deficit than the intra-canopy variability of leaf temperature. We conclude that simulating the shoot hydraulic structure is a prerequisite if FSPM’s are to be used to assess gas-exchange rates of complex plant canopies as those of grapevines. Finally, HydroShoot is available through the OpenAlea platform (https://github.com/openalea/hydroshoot) as a set of reusable modules.