In Diffusion Weighted Magnetic Resonance Imaging (DW-MRI) the mod-eling of the magnitude signal is complicated by the Rician distribution of the noise. It is well known that when dealing instead with the complex valued signal, the real and imaginary parts are affected by Gaussian distributed noise and their modeling can thus benefit from any estimation technique suitable for this noise distribution. We present a quantitative analysis of the difference between the modeling of the magnitude diffusion signal and the modeling in the complex domain. The noisy complex and magnitude diffusion signals are obtained for a physically realistic sce-nario in a region close to a restricting boundary. These signals are then fitted with the Simple Harmonic Oscillator based Reconstruction and Estimation (SHORE) bases and the reconstruction performances are quantitatively compared. The noisy magni-tude signal is also fitted by taking into account the Rician distribution of the noise via the integration of a Maximum Likelihood Estimator (MLE) in the SHORE. We discuss the performance of the reconstructions as function of the Signal to Noise Ra-tio (SNR) and the sampling resolution of the diffusion signal. We show that fitting in the complex domain generally allows for quantitatively better signal reconstruction, also with a poor SNR, provided that the sampling resolution of the signal is ade-quate. This applies also when the reconstruction is compared to the one performed on the magnitude via the MLE.