Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure - Inria - Institut national de recherche en sciences et technologies du numérique Accéder directement au contenu
Article Dans Une Revue Nucleic Acids Research Année : 2004

Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure

Résumé

Java Protein Dossier (JPD) is a new concept, database and visualization tool providing one of the largest collections of the physicochemical parameters describing proteins' structure, stability, function and interaction with other macromolecules. By collecting as many descriptors/parameters as possible within a single database, we can achieve a better use of the available data and information. Furthermore, data grouping allows us to generate different para-meters with the potential to provide new insights into the sequence–structure–function relationship. In J PD, residue selection can be performed according to multiple criteria. J PD can simultaneously display and analyze all the physicochemical parameters of any pair of structures, using precalculated structural alignments, allowing direct parameter comparison at corresponding amino acid positions among homolo-gous structures. In order to focus on the physico-chemical (and consequently pharmacological) profile of proteins, visualization tools (showing the structure and structural parameters) also had to be optimized. Our response to this challenge was the use of Java technology with its exceptional level of interactivity. JPD is freely accessible (within the Gold Sting Suite) at http://sms.cbi.cnptia.embrapa.br/ (Option: Java Protein Dossier)
Fichier principal
Vignette du fichier
Nucl. Acids Res.-2004-Neshich-W595-601.pdf (776.23 Ko) Télécharger le fichier
Origine : Fichiers éditeurs autorisés sur une archive ouverte
Loading...

Dates et versions

hal-01092990 , version 1 (09-12-2014)

Identifiants

Citer

Goran Neshich, Walter Rocchia, Adauto L Mancini, Michel E. B. Yamagishi, Paula R. Kuser, et al.. Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure. Nucleic Acids Research, 2004, Web Server issue, 32, pp.W595-W601. ⟨10.1093/nar/gkh480⟩. ⟨hal-01092990⟩
73 Consultations
96 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More