Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure - Inria - Institut national de recherche en sciences et technologies du numérique Access content directly
Journal Articles Nucleic Acids Research Year : 2004

Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure

Abstract

Java Protein Dossier (JPD) is a new concept, database and visualization tool providing one of the largest collections of the physicochemical parameters describing proteins' structure, stability, function and interaction with other macromolecules. By collecting as many descriptors/parameters as possible within a single database, we can achieve a better use of the available data and information. Furthermore, data grouping allows us to generate different para-meters with the potential to provide new insights into the sequence–structure–function relationship. In J PD, residue selection can be performed according to multiple criteria. J PD can simultaneously display and analyze all the physicochemical parameters of any pair of structures, using precalculated structural alignments, allowing direct parameter comparison at corresponding amino acid positions among homolo-gous structures. In order to focus on the physico-chemical (and consequently pharmacological) profile of proteins, visualization tools (showing the structure and structural parameters) also had to be optimized. Our response to this challenge was the use of Java technology with its exceptional level of interactivity. JPD is freely accessible (within the Gold Sting Suite) at http://sms.cbi.cnptia.embrapa.br/ (Option: Java Protein Dossier)
Fichier principal
Vignette du fichier
Nucl. Acids Res.-2004-Neshich-W595-601.pdf (776.23 Ko) Télécharger le fichier
Origin : Publisher files allowed on an open archive
Loading...

Dates and versions

hal-01092990 , version 1 (09-12-2014)

Identifiers

Cite

Goran Neshich, Walter Rocchia, Adauto L Mancini, Michel E. B. Yamagishi, Paula R. Kuser, et al.. Java Protein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure. Nucleic Acids Research, 2004, Web Server issue, 32, pp.W595-W601. ⟨10.1093/nar/gkh480⟩. ⟨hal-01092990⟩
73 View
95 Download

Altmetric

Share

Gmail Facebook X LinkedIn More