The UK Ministry of Defence (MoD) is focusing on and shifting toward a Network Enabled Capability (NEC) approach for improved military effect. This is being realised through the physical networking and coherent integration of existing and future resources including sensors, effectors, support services, and decision makers. This paper is a case study (for NEC) of how the development and use of scenarios for demonstrating academic research can aid and help manage innovation. It illustrates the development, use and application of a multiple stakeholder scenario within the NECTISE research programme that helped establish and exploit a collaborative multidisciplinary working environment and how it helped manage innovative academic research. Our experience suggests that this approach can support the engagement of multiple stakeholders with differing perceptions and priorities and will provide a scenario development strategy for improved research and innovation for many other large systems.