The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Olivier Jaillon
(1)
,
Jean-Marc Aury
(1)
,
Benjamin Noel
(1)
,
Alberto Policriti
(2, 3)
,
Christian Clepet
(4)
,
Alberto Cassagrande
(2, 5)
,
Nathalie Choisne
(1, 4)
,
Sébastien Aubourg
(4)
,
Nicola Vitulo
(6)
,
Claire Jubin
(1)
,
Alessandro Vezzi
(6)
,
Fabrice Legeai
(7)
,
Philippe Hugueney
(8)
,
Corinne da Silva
(1)
,
David Horner
(9)
,
Erica Mica
(9)
,
Delphine Jublot
(4)
,
Julie Poulain
(1)
,
Clémence Bruyère
(4)
,
Alain Billaut
(1)
,
Béatrice Ségurens
(1)
,
Michel Gouyvenoux
(1)
,
Edgardo Ugarte
(1)
,
Federica Cattorano
(2)
,
Véronique Anthouard
(1)
,
Virginie Vico
(1)
,
Christian del Fabbro
(2, 3)
,
Michaël Alaux
(7)
,
Gabriele Di Gaspero
(2, 5)
,
Vincent Dumas
(8)
,
Nicoletta Felice
(2, 5)
,
Sophie Paillard
(4)
,
Irena Juman
(2, 5)
,
Marco Moroldo
(4)
,
Simone Scalabrin
(2, 3)
,
Aurélie Canaguier
(4)
,
Isabelle Le Clainche
(4)
,
Giorgio Malacrida
(6)
,
Eléonore Durand
(7)
,
Graziano Pesole
(10, 11)
,
Valérie Laucou
(12)
,
Philippe Chatelet
(13)
,
Didier Merdinoglu
(8)
,
Massimo Delledonne
(14)
,
Mario Pezzotti
(15, 16)
,
Alain Lecharny
(4)
,
Claude Scarpelli
(1)
,
François Artiguenave
(1)
,
M. Enrico Pé
(9, 15)
,
Giorgio Valle
(6, 15)
,
Michele Morgante
(15)
,
Michel Caboche
(4)
,
Anne-Françoise Adam-Blondon
(4)
,
Jean Weissenbach
(1)
,
Francis Quétier
(1)
,
Patrick Wincker
(1)
1
UMR 8030 -
Génomique métabolique
2 IGA - Istituto di Genomica Applicata
3 DIMI - Dipartimento di Matematica e Informatica - Universita Udine
4 URGV - Unité de recherche en génomique végétale
5 DISA - Dipartimento di Scienze Agrarie ed Ambientali - Universita Udine
6 CRIBI - CRIBI
7 URGI - Unité de Recherche Génomique Info
8 SVQV - Santé de la vigne et qualité du vin
9 Dipartimento di Scienze Biomolecolari e Biotecnologie
10 Dipartimento di Biochimica e Biologia Molecolare
11 Istituto Tecnologie Biomediche
12 UMR DGPC - Diversité et génomes des plantes cultivées
13 UMR DAP - Développement et amélioration des plantes
14 DST - Dipartimento Scientifico e Tecnologico
15 Dipartimento di Scienze, Tecnologie e Mercati della Vite e del Vino
16 VIGNA-CRA INITIATIVE - VIGNA-CRA Initiative
2 IGA - Istituto di Genomica Applicata
3 DIMI - Dipartimento di Matematica e Informatica - Universita Udine
4 URGV - Unité de recherche en génomique végétale
5 DISA - Dipartimento di Scienze Agrarie ed Ambientali - Universita Udine
6 CRIBI - CRIBI
7 URGI - Unité de Recherche Génomique Info
8 SVQV - Santé de la vigne et qualité du vin
9 Dipartimento di Scienze Biomolecolari e Biotecnologie
10 Dipartimento di Biochimica e Biologia Molecolare
11 Istituto Tecnologie Biomediche
12 UMR DGPC - Diversité et génomes des plantes cultivées
13 UMR DAP - Développement et amélioration des plantes
14 DST - Dipartimento Scientifico e Tecnologico
15 Dipartimento di Scienze, Tecnologie e Mercati della Vite e del Vino
16 VIGNA-CRA INITIATIVE - VIGNA-CRA Initiative
Olivier Jaillon
- Function : Author
- PersonId : 756900
- ORCID : 0000-0002-7237-9596
- IdRef : 119733374
Jean-Marc Aury
- Function : Author
- PersonId : 756899
- ORCID : 0000-0003-1718-3010
Christian Clepet
- Function : Author
- PersonId : 748882
- IdHAL : clepet
Nathalie Choisne
- Function : Author
- PersonId : 1202657
- ORCID : 0000-0001-6024-1664
Sébastien Aubourg
- Function : Author
- PersonId : 737126
- IdHAL : sebastien-aubourg
- ORCID : 0000-0002-0695-4767
- IdRef : 134336380
Philippe Hugueney
- Function : Author
- PersonId : 1206319
- IdHAL : phugueney
- ORCID : 0000-0002-1641-9274
Julie Poulain
- Function : Author
- PersonId : 756903
- ORCID : 0000-0002-8744-3116
- IdRef : 061407232
Sophie Paillard
- Function : Author
- PersonId : 737638
- IdHAL : sophie-paillard
- ORCID : 0000-0001-7516-848X
Marco Moroldo
- Function : Author
- PersonId : 1202688
- IdHAL : marco-moroldo
- ORCID : 0000-0002-4440-4950
Aurélie Canaguier
- Function : Author
- PersonId : 737282
- IdHAL : aurelie-canaguier
- ORCID : 0000-0001-8674-4622
Isabelle Le Clainche
- Function : Author
- PersonId : 737279
- IdHAL : isabelle-le-clainche
- ORCID : 0000-0002-7296-2765
- IdRef : 253128625
Eléonore Durand
- Function : Author
- PersonId : 179995
- IdHAL : eleonore-durand
- ORCID : 0000-0002-0912-9252
Philippe Chatelet
- Function : Author
- PersonId : 1141908
- ORCID : 0000-0002-3580-5322
Didier Merdinoglu
- Function : Author
- PersonId : 1206182
- ORCID : 0000-0001-8568-0495
Massimo Delledonne
- Function : Author
- PersonId : 758802
- ORCID : 0000-0002-7100-4581
Anne-Françoise Adam-Blondon
- Function : Author
- PersonId : 744113
- IdHAL : anne-francoise-adam-blondon
- ORCID : 0000-0002-3412-9086
- IdRef : 165063173
Patrick Wincker
- Function : Author
- PersonId : 757160
- ORCID : 0000-0001-7562-3454
Abstract
The analysis of the first plant genomes provided unexpected evidence for genome duplication events in species that had previously been considered as true diploids on the basis of their genetics. These polyploidization events may have had important consequences in plant evolution, in particular for species radiation and adaptation and for the modulation of functional capacities. Here we report a high-quality draft of the genome sequence of grapevine (Vitis vinifera) obtained from a highly homozygous genotype. The draft sequence of the grapevine genome is the fourth one produced so far for flowering plants, the second for a woody species and the first for a fruit crop (cultivated for both fruit and beverage). Grapevine was selected because of its important place in the cultural heritage of humanity beginning during the Neolithic period. Several large expansions of gene families with roles in aromatic features are observed. The grapevine genome has not undergone recent genome duplication, thus enabling the discovery of ancestral traits and features of the genetic organization of flowering plants. This analysis reveals the contribution of three ancestral genomes to the grapevine haploid content. This ancestral arrangement is common to many dicotyledonous plants but is absent from the genome of rice, which is a monocotyledon. Furthermore, we explain the chronology of previously described whole-genome duplication events in the evolution of flowering plants.
Origin : Files produced by the author(s)
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