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Conference Papers Year : 2002

Intragenomic reiterations detection using hidden Markov models

Bertrand Aigle
Bernard Decaris
  • Function : Author
Pierre Leblond

Abstract

We present a genomic data mining method in which the user describes a signal worked out by a second order HMM. This signal representing the probability to classify a nucleotidic residue or a group of residues in a particular state, allows the localization of repetitions in a complete bacterial genomic sequence.

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Other [cs.OH]
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Dates and versions

inria-00100914 , version 1 (26-09-2006)

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  • HAL Id : inria-00100914 , version 1

Cite

Sébastien Hergalant, Bertrand Aigle, Bernard Decaris, Pierre Leblond, Jean-François Mari. Intragenomic reiterations detection using hidden Markov models. 10th International Conference on Intelligent Systems for Molecular Biology - ISMB 2002, Aug 2002, Edmonton, Canada, 1 p. ⟨inria-00100914⟩
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