RIOT is a micro-kernel dedicated to IoT applications that adopts eBPF (extended Berkeley Packet Filters) to implement so-called femto-containers. As micro-controllers rarely feature hardware memory protection, the isolation of eBPF virtual machines (VM) is critical to ensure system integrity against potentially malicious programs. This paper shows how to directly derive, within the Coq proof assistant, the verified C implementation of an eBPF virtual machine from a Gallina specification. Leveraging the formal semantics of the CompCert C compiler, we obtain an end-to-end theorem stating that the C code of our VM inherits the safety and security properties of the Gallina specification. Our refinement methodology ensures that the isolation property of the specification holds in the verified C implementation. Preliminary experiments demonstrate satisfying performance.