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Journal Articles Bioinformatics Year : 2022

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation

Abstract

Motivation Reconciliation between a host and its symbiont phylogenies or between a species and a gene phylogenies is a prevalent approach in evolution, however no simple generic tool (i.e. virtually usable by all reconciliation software, from host/symbiont to species/gene comparisons) is available to visualise reconciliation results. Moreover there is no tool to visualise 3-levels reconciliations, i.e. to visualise 2 nested reconciliations as for example in a host/symbiont/gene complex. Results Thirdkind is a light and easy to install command line software producing svg files displaying reconciliations, including 3-levels reconciliations. It takes a standard format recPhyloXML as input, and is thus usable with most reconciliation software. Availability https://github.com/simonpenel/thirdkind/wiki Supplementary information Supplementary data are available at Bioinformatics online.
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Dates and versions

hal-03563666 , version 1 (30-03-2022)

Identifiers

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Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier. Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. Bioinformatics, 2022, 38 (8), pp.2350-2352. ⟨10.1093/bioinformatics/btac062⟩. ⟨hal-03563666⟩
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