Compacting de Bruijn graphs from sequencing data quickly and in low memory

Rayan Chikhi; Antoine Limasset; Paul Medvedev

doi:10.1093/bioinformatics/btw279

Journal Articles Bioinformatics Year : 2016

Compacting de Bruijn graphs from sequencing data quickly and in low memory

(1) , (2) , (3)

1
2
3

Rayan Chikhi

Function : Author
PersonId : 14839
IdHAL : rayan-chikhi
ORCID : 0000-0003-1099-8735
IdRef : 16546769X

Bioinformatics and Sequence Analysis

Antoine Limasset

Function : Author
PersonId : 180632
IdHAL : antoine-limasset
ORCID : 0000-0002-0669-4141
IdRef : 223503908

Scalable, Optimized and Parallel Algorithms for Genomics

Paul Medvedev

Function : Author

Pennsylvania State University

Domains

Bioinformatics [q-bio.QM]

Rayan Chikhi : Connect in order to contact the contributor

https://hal.science/hal-01395704

Submitted on : Friday, November 11, 2016-1:29:46 PM

Last modification on : Thursday, November 7, 2024-1:42:02 PM

Dates and versions

hal-01395704 , version 1 (11-11-2016)

Identifiers

HAL Id : hal-01395704 , version 1
DOI : 10.1093/bioinformatics/btw279
PUBMEDCENTRAL : PMC4908363

Cite

Rayan Chikhi, Antoine Limasset, Paul Medvedev. Compacting de Bruijn graphs from sequencing data quickly and in low memory. Bioinformatics, 2016, 32 (12), pp.i201 - i208. ⟨10.1093/bioinformatics/btw279⟩. ⟨hal-01395704⟩

Export

BibTeX XML-TEI Dublin Core DC Terms EndNote DataCite

Collections

UNIV-RENNES1 CNRS INRIA INSA-RENNES IRISA CENTRALESUPELEC IRISA-D7 CRISTAL INRIA2 CRISTAL-BONSAI UR1-MATH-STIC UR1-UFR-ISTIC UNIV-RENNES UNIV-LILLE UR1-MATH-NUM

290 View

0 Download

Compacting de Bruijn graphs from sequencing data quickly and in low memory

Domains

Dates and versions

Identifiers

Cite

Export

Collections

Altmetric

Share