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Structure: Internal structure identifier : 54446
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ecceTERA: Comprehensive gene tree-species tree reconciliation using parsimony

Edwin Jacox , Cedric Chauve , Gergely J Szöllősi , Yann Ponty , Celine Scornavacca
Bioinformatics, 2016, 32 (13), pp.2056-2058. ⟨10.1093/bioinformatics/btw105⟩
Journal articles hal-01276903v1

Asymptotic Lattice Path Enumeration Using Diagonals

Stephen Melczer , Marni Mishna
Algorithmica, 2016, 75 (4), pp.782 - 811. ⟨10.1007/s00453-015-0063-1⟩
Journal articles hal-01394157v1

Spectra disentangling applied to the Hyades binary theta2 Tauri AB: new orbit, orbital parallax and component properties

K. B. V. Torres , P. Lampens , Y. Frémat , H. Hensberge , Y. Lebreton , et al.
Astronomy and Astrophysics - A&A, 2011, 525, pp.A50. ⟨10.1051/0004-6361/201015166⟩
Journal articles hal-01122727v1
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Counting, generating and sampling tree alignments

Cedric Chauve , Julien Courtiel , Yann Ponty
ALCOB - 3rd International Conference on Algorithms for Computational Biology - 2016, Jun 2016, Trujillo, Spain. pp.53--64, ⟨10.1007/978-3-319-38827-4_5⟩
Conference papers hal-01154030v3

The BRaliBase dent - a tale of benchmark design and interpretation.

Benedikt Löwes , Cedric Chauve , Yann Ponty , Robert Giegerich
Briefings in Bioinformatics, 2017, 18 (2), pp.306--311. ⟨10.1093/bib/bbw022⟩
Journal articles hal-01273406v1
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Tableau sequences, open diagrams, and Baxter families

Sophie Burrill , Julien Courtiel , Eric Fusy , Stephen Melczer , Marni Mishna
Preprints, Working Papers, ... hal-01188328v1

Proceedings of the 1st workshop on Computational Methods for Structural RNAs

Fabrice Jossinet , Yann Ponty , Jérôme Waldispühl
Jossinet, Fabrice; Ponty, Yann; Waldispühl, Jérôme. McGill University, pp.76, 2014, 978-2-9550187-0-5. ⟨10.15455/CMSR.2014.0000⟩
Books hal-01071417v1
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Ancestral gene synteny reconstruction improves extant species scaffolding

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier , et al.
BMC Genomics, 2015, 16 (Suppl 10), pp.S11. ⟨10.1186/1471-2164-16-S10-S11⟩
Journal articles hal-01180303v2

A new combinatorial identity for unicellular maps, via a direct bijective approach

Chapuy Guillaume
Advances in Applied Mathematics, 2011, 47 (4), pp.874--893. ⟨10.1016/j.aam.2011.04.004⟩
Journal articles hal-00713476v1

Effective Coefficient Asymptotics of Multivariate Rational Functions via Semi-Numerical Algorithms for Polynomial Systems

Stephen Melczer , Bruno Salvy
Journal of Symbolic Computation, 2021, 103, pp.234--279. ⟨10.1016/j.jsc.2020.01.001⟩
Journal articles hal-02185586v1
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Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models

Cedric Chauve , Yann Ponty , Michael Wallner
Journal of Mathematical Biology, 2019, 80 (5), pp.1353--1388. ⟨10.1007/s00285-019-01465-x⟩
Journal articles hal-02169271v1
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Taming reluctant random walks in the positive quadrant

Jeremie Lumbroso , Marni Mishna , Yann Ponty
GASCOM - 10th conference on random generation of combinatorial structures - 2016, Jun 2016, Bastia, France. pp.99 -- 114, ⟨10.1016/j.endm.2017.05.008⟩
Conference papers hal-01291164v1
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A hybrid combinatorial method for docking single stranded RNAs in a protein pockect at the thermodynamic equilibrium

Chinmay Singhal , Yann Ponty , Isaure Chauvot de Beauchêne
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2018, Marseille, France
Conference papers hal-02394529v1
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Inferring Positional Homologs with Common Intervals of Sequences

Guillaume Blin , Annie Chateau , Cedric Chauve , Yannick Gingras
4th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'06), Sep 2006, Montreal, Canada. pp.24-38
Conference papers hal-00620367v1
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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise , et al.
Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩
Journal articles hal-00647725v1
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Lattice Walks in Cones: Combinatorial and Probabilistic Aspects

Amélie Trotignon
Combinatorics [math.CO]. Université de Tours / Région Centre; Simon Fraser university (Burnaby, Canada), 2019. English. ⟨NNT : ⟩
Theses tel-02459885v1
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Diagonalization and Rationalization of algebraic Laurent series

Boris Adamczewski , Jason P. Bell
Ann. Sci. Éc. Norm. Supér., 2013, 46 (6), 49 pp
Journal articles hal-00698706v1
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A bijection for covered maps, or a shortcut between Harer-Zagier's and Jackson's formulas

Olivier Bernardi , Guillaume Chapuy
Journal of Combinatorial Theory, Series A, 2011, 118(6) (6), pp. 1718-1748
Journal articles hal-00445647v2

Tableau sequences, open diagrams, and Baxter families

Sophie Burrill , Julien Courtiel , Eric Fusy , Stephen Melczer , Marni Mishna
European Journal of Combinatorics, 2016, 58, pp.144 - 165. ⟨10.1016/j.ejc.2016.05.011⟩
Journal articles hal-01394155v1
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Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuels

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier , et al.
Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France
Conference papers hal-01394409v1
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Artin-Schreier extensions of normal bases

David Thomson , Colin Weir
WCC2015 - 9th International Workshop on Coding and Cryptography 2015, Anne Canteaut, Gaëtan Leurent, Maria Naya-Plasencia, Apr 2015, Paris, France
Conference papers hal-01275782v1
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On oracle-type local recovery guarantees in compressed sensing

Ben Adcock , Claire Boyer , Simone Brugiapaglia
Information and Inference, 2020
Journal articles hal-01811947v2
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The breakpoint distance for signed sequences

Guillaume Blin , Guillaume Fertin , Cedric Chauve
1st Conference on Algorithms and Computational Methods for biochemical and Evolutionary Networks (CompBioNets'04), Dec 2004, Recife, Brazil, Brazil. pp.3-16
Conference papers hal-00620356v1
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Genes Order and Phylogenetic Reconstruction: Application to $\gamma$-Proteobacteria

Guillaume Blin , Cedric Chauve , Guillaume Fertin
3rd Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'05), Sep 2005, Dublin, Ireland, Ireland. pp.11-20
Conference papers hal-00620362v1

An approximation algorithm for computing a parsimonious first speciation in the gene duplication model

Aïda Ouangraoua , Krister M. Swenson , Cedric Chauve
RECOMB-Comparative Genomics, 2010, Canada. pp.290-302
Conference papers hal-00527624v1
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Discrete harmonic functions in the three-quarter plane

Amélie Trotignon
Preprints, Working Papers, ... hal-02159567v2
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Multiple asymptotics of kinetic equations with internal states

Benoît Perthame , Weiran Sun , Min Tang , Shugo Yasuda
Mathematical Models and Methods in Applied Sciences, 2020, 30 (06), ⟨10.1142/S0218202520400060⟩
Journal articles hal-02194421v1
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High performance SIMD modular arithmetic for polynomial evaluation

Pierre Fortin , Ambroise Fleury , François Lemaire , Michael Monagan
Concurrency and Computation: Practice and Experience, 2021, 33 (16), pp.e6270. ⟨10.1002/cpe.6270⟩
Journal articles hal-02552673v1
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On walks avoiding a quadrant

Kilian Raschel , Amélie Trotignon
The Electronic Journal of Combinatorics, 2019, 26 (3)
Journal articles hal-01848287v2
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Counting unicellular maps on non-orientable surfaces

Olivier Bernardi , Guillaume Chapuy
22nd International Conference on Formal Power Series and Algebraic Combinatorics (FPSAC 2010), 2010, San Francisco, United States. pp.155-166, ⟨10.46298/dmtcs.2859⟩
Conference papers hal-01186287v1