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Structure: Internal structure identifier : 51872

Comparing Two Clusterings Using Matchings between Clusters of Clusters

Frédéric Cazals , Dorian Mazauric , Romain Tetley , Rémi Watrigant
ACM Journal of Experimental Algorithmics, 2019, 24 (1), pp.1-41. ⟨10.1145/3345951⟩
Journal articles hal-02425599v1

Characterizing molecular flexibility by combining lRMSD measures

Romain Tetley , Frédéric Cazals
Preprints, Working Papers, ... hal-01968175v1
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The Structural Bioinformatics Library: modeling in biomolecular science and beyond

Frédéric Cazals , Tom Dreyfus
[Research Report] RR-8957, Inria. 2016
Reports hal-01379635v1
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Boosting the analysis of protein interfaces with Multiple Interface String Alignments: illustration on the spikes of coronaviruses

Stéphane Bereux , Bernard Delmas , Frédéric Cazals
Proteins - Structure, Function and Bioinformatics, 2022, 90 (3), pp.848-857. ⟨10.1002/prot.26279⟩
Journal articles hal-03387889v1
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Stoichiometry Determination for Mass-spectrometry Data: the Interval Case

Deepesh Agarwal , Frédéric Cazals , Noël Malod-Dognin
[Research Report] RR-8101, INRIA. 2013, pp.52
Reports hal-00741491v3

Modeling Macro-Molecular Interfaces with Intervor

Sébastien Loriot , Frédéric Cazals
Bioinformatics, 2010, 26 (7), pp.964-965. ⟨10.1093/bioinformatics/btq052⟩
Journal articles hal-00849822v1
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Robust Topological Inference: Distance To a Measure and Kernel Distance

Frédéric Chazal , Brittany Fasy , Fabrizio Lecci , Bertrand Michel , Alessandro Rinaldo , et al.
Journal of Machine Learning Research, 2018, 18 (159), pp.40
Journal articles hal-01232217v1
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Clustering stability revealed by matchings between clusters of clusters

Frédéric Cazals , Dorian Mazauric , Romain Tetley
[Research Report] RR-8992, Inria Sophia Antipolis; Université Côte d'Azur. 2016, pp.51
Reports hal-01410396v1

The Structural Bioinformatics Library: modeling in biomolecular science and beyond

Frédéric Cazals , Tom Dreyfus
Bioinformatics, 2017, 33 (8), ⟨10.1093/bioinformatics/btw752⟩
Journal articles hal-01570848v1
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Shelling the Voronoi interface of protein-protein complexes predicts residue activity and conservation

Benjamin Bouvier , Raik Gruenberg , Michael Nilges , Frédéric Cazals
[Research Report] RR-6415, INRIA. 2008
Reports inria-00206173v3
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Characterizing the Morphology of Protein Binding Patches

Noël Malod-Dognin , Achin Bansal , Frédéric Cazals
[Research Report] RR-7743, INRIA. 2011, pp.49
Reports inria-00626548v2
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Identification rapide de familles protéiques par dominance

Mathilde Le Boudic-Jamin , Noël Malod-Dognin , Alexandre Cornu , Jacques Nicolas , Rumen Andonov
12th Annual Congress of the French National Society of Operations Research and Decision Science (ROADEF), École Nationale Supérieure des Mines de Saint-Étienne, Mar 2011, Saint-Étienne, France. pp.791-792
Conference papers inria-00611457v1
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Efficient computation of the volume of a polytope in high-dimensions using Piecewise Deterministic Markov Processes

Augustin Chevallier , Frédéric Cazals , Paul Fearnhead
AISTATS 2022 - 25th International Conference on Artificial Intelligence and Statistics, Mar 2022, Virtual, France
Conference papers hal-03918039v1

Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii

Théo Le Moigne , Edoardo Sarti , Antonin Nourisson , Mirko Zaffagnini , Alessandra Carbone , et al.
Journal of Structural Biology, 2022, 214 (3), pp.107873. ⟨10.1016/j.jsb.2022.107873⟩
Journal articles hal-03700038v1
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Design of the CGAL Spherical Kernel and application to arrangements of circles on a sphere

Pedro M. M. de Castro , Frédéric Cazals , Sebastien Loriot , Monique Teillaud
Computational Geometry, 2009
Journal articles inria-00335865v1
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Comparaison de deux clusterings par couplage entre clusters de clusters

Frédéric Cazals , Dorian Mazauric , Romain Tetley , Rémi Watrigant
ALGOTEL 2018 - 20èmes Rencontres Francophones sur les Aspects Algorithmiques des Télécommunications, May 2018, Roscoff, France
Conference papers hal-01774440v1
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Localiser une cible dans un graphe

Julien Bensmail , Dorian Mazauric , Fionn Mc Inerney , Nicolas Nisse , Stéphane Pérennes
ALGOTEL 2018 - 20èmes Rencontres Francophones sur les Aspects Algorithmiques des Télécommunications, May 2018, Roscoff, France
Conference papers hal-01774827v1
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Studying dynamics without explicit dynamics: A structure‐based study of the export mechanism by AcrB

Méliné Simsir , Isabelle Broutin , Isabelle Mus‐veteau , Frédéric Cazals
Proteins - Structure, Function and Bioinformatics, 2020, ⟨10.1002/prot.26012⟩
Journal articles hal-03011350v1
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Unveiling Contacts within Macro-molecular assemblies by solving Minimum Weight Connectivity Inference Problems

Deepesh Agarwal , Christelle Caillouet , David Coudert , Frédéric Cazals
Molecular and Cellular Proteomics, 2015, 14, pp.2274-2284. ⟨10.1074/mcp.M114.047779⟩
Journal articles hal-01245401v2
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Experimental Evaluation of a Branch and Bound Algorithm for Computing Pathwidth and Directed Pathwidth

David Coudert , Dorian Mazauric , Nicolas Nisse
ACM Journal of Experimental Algorithmics, 2016, 21 (1), pp.23. ⟨10.1145/2851494⟩
Journal articles hal-01266496v1
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Multi-scale Geometric Modeling of Ambiguous Shapes with Toleranced Balls and Compoundly Weighted alpha-shapes

Frédéric Cazals , Tom Dreyfus
Symposium on Geometry Processing - 2010, Eurographics symposium in cooperation with ACM Siggraph, Jul 2010, Lyon, France. pp.1713-1722
Conference papers hal-00796078v1
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Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers

Susanne Bornelöv , Simon Marillet , Jan Komorowski
BMC Bioinformatics, 2014, 15 (1), pp.139
Journal articles hal-00995110v1
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A generic software framework for Wang-Landau type algorithms

Augustin Chevallier , Frédéric Cazals
Preprints, Working Papers, ... hal-02514559v1
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On the Characterization and Selection of Diverse Conformational Ensembles, with Applications to Flexible Docking

Sebastien Loriot , Sushant Sachdeva , Karine Bastard , Chantal Prevost , Frédéric Cazals
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8 (2), pp.487-498. ⟨10.1109/TCBB.2009.59⟩
Journal articles hal-00796092v1
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Comparing two clusterings using matchings between clusters of clusters

Frédéric Cazals , Dorian Mazauric , Romain Tetley , Rémi Watrigant
[Research Report] RR-9063, INRIA Sophia Antipolis - Méditerranée; Universite Cote d'Azur. 2017, pp.1-45
Reports hal-01514872v4
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Predicting binding poses and affinities for protein-ligand complexes in the 2015 D3R Grand Challenge using a physical model with a statistical parameter estimation

Sergei Grudinin , Maria Kadukova , Andreas Eisenbarth , Simon Marillet , Frédéric Cazals
Journal of Computer-Aided Molecular Design, 2016, 30 (9), pp.791-804. ⟨10.1007/s10822-016-9976-2⟩
Journal articles hal-01377738v1
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Overlaying a hypergraph with a graph with bounded maximum degree

Frédéric Havet , Dorian Mazauric , Viet-Ha Nguyen , Rémi Watrigant
Discrete Applied Mathematics, In press, 319, pp.394-406. ⟨10.1007/978-3-030-39219-2_32⟩
Journal articles hal-02025469v3
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Selectivity of pyoverdine recognition by the FpvA receptor of Pseudomonas aeruginosa from molecular dynamics simulations

Benjamin Bouvier , Christine Cézard , Pascal Sonnet
Physical Chemistry Chemical Physics, 2015, 17 (27), pp.18022-18034. ⟨10.1039/c5cp02939b⟩
Journal articles hal-02395207v1

Low-Complexity Nonparametric Bayesian Online Prediction with Universal Guarantees

Frédéric Cazals , Alix Lhéritier
NeurIPS 2019 - Thirty-third Conference on Neural Information Processing Systems, Dec 2019, Vancouver, Canada
Conference papers hal-02425602v1

Computing the Volume of Union of Balls: a Certified Algorithm

Frédéric Cazals , Kanhere Harshad , Sébastien Loriot
ACM Transactions on Mathematical Software, 2011, 38 (1), ⟨10.1145/2049662.2049665⟩
Journal articles hal-00849809v1