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Beyond the chemical master equation: stochastic chemical kinetics coupled with auxiliary processes
Davin Lunz
,
Gregory Batt
,
Jakob Ruess
,
Joseph Frédéric Bonnans
Journal articles
hal-02991103v2
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Maximizing protein production by keeping cells at optimal secretory stress levels using real-time control approaches
Sebastián Sosa-Carrillo
,
Henri Galez
,
Sara Napolitano
,
François Bertaux
,
Gregory Batt
et al.
2022
Preprints, Working Papers, ...
hal-03940186v1
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Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
Anđela Davidović
,
Remy Chait
,
Gregory Batt
,
Jakob Ruess
2021
Preprints, Working Papers, ...
hal-03544059v1
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Revisiting moment-closure methods with heterogeneous multiscale population models
Davin Lunz
,
Joseph Frédéric Bonnans
,
Jakob Ruess
Journal articles
hal-03479587v2
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Modelling and optimal control of a two-species bioproducing microbial consortium
Davin Lunz
,
Joseph Frédéric Bonnans
Journal articles
hal-03479385v2
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Using single-cell models to predict the functionality of synthetic circuits at the population scale
Chetan Aditya
,
François Bertaux
,
Gregory Batt
,
Jakob Ruess
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (11), pp.e2114438119. ⟨10.1073/pnas.211443811⟩
Journal articles
hal-03544044v2
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Enabling reactive microscopy with MicroMator
Zachary Fox
,
Steven Fletcher
,
Achille Fraisse
,
Chetan Aditya
,
Sebastián Sosa-Carrillo
et al.
Journal articles
hal-03261134v2
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Methods and tools for the optimal design of experiments applied to the efficient characterization of enzyme-mediated escape to antimicrobial treatments
Arthur Carcano
Bioinformatics [q-bio.QM]. Université de Paris, 2021. English. ⟨NNT : ⟩
Theses
tel-03612649v1
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A light tunable differentiation system for the creation and control of consortia in yeast
Chetan Aditya
,
François Bertaux
,
Gregory Batt
,
Jakob Ruess
Journal articles
pasteur-03263577v1
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External control of microbial populations for bioproduction: A modeling and optimization viewpoint
François Bertaux
,
Jakob Ruess
,
Grégory Batt
Journal articles
hal-03536479v1
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Optimizing Noisy Complex Systems Liable to Failure
Davin Lunz
Journal articles
hal-03537040v1
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Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight
François Bertaux
,
Sebastián Sosa Carrillo
,
Viktoriia Gross
,
Achille Fraisse
,
Chetan Aditya
et al.
Journal articles
hal-03744485v2
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Optimal control of bioproduction in the presence of population heterogeneity
Davin Lunz
,
J. Frédéric Bonnans
,
Jakob Ruess
Journal articles
hal-03445175v3
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Development of a light tunable differentiation system for the creation and control of microbial consortia in S. cerevisiae, its single cell characterization for development of predictive models, and application to heterologous expression
Chetan Aditya
Quantitative Methods [q-bio.QM]. Université de Paris, 2021. English. ⟨NNT : ⟩
Theses
tel-03612653v1
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Pipeline for the systematic characterization of heterologous protein secretory load to assess bioproduction efficiency
Sebastián Sosa-Carrillo
Quantitative Methods [q-bio.QM]. Université de Paris, 2021. English. ⟨NNT : ⟩
Theses
tel-03612661v1
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Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level
Anđela Davidović
,
Remy Chait
,
Gregory Batt
,
Jakob Ruess
Journal articles
hal-03625706v1
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