AphidBase: a database for aphid genomic resources - Inria - Institut national de recherche en sciences et technologies du numérique Accéder directement au contenu
Article Dans Une Revue Bioinformatics Année : 2007

AphidBase: a database for aphid genomic resources

Résumé

AphidBase aims to (i) store recently acquired genomic resources on aphids and (ii) compare them to other insect resources as functional annotation tools. For that, the Drosophila melanogaster genome has been loaded in the database using the GMOD open source software for a comparison with the 17 069 pea aphid unique transcripts (contigs) and the 13 639 gene transcripts of the Anopheles gambiae. Links to FlyBase and A.gambiae Entrez databases allow a rapid characterization of the putative functions of the aphid sequences. Text mining of the D.melanogaster literature was performed to construct a network of co-cited gene or protein names, which should facilitate functional annotation of aphid homolog sequences. AphidBase represents one of the first genomic databases for a hemipteran insect. AVAILABILITY: http://w3.rennes.inra.fr/AphidBase.

Dates et versions

inria-00180141 , version 1 (17-10-2007)

Licence

Paternité

Identifiants

Citer

Jean-Pierre Gauthier, Fabrice Legeai, Alain Zasadzinski, Claude Rispe, Denis Tagu. AphidBase: a database for aphid genomic resources. Bioinformatics, 2007, 23 (6), pp.783-784. ⟨10.1093/bioinformatics/btl682⟩. ⟨inria-00180141⟩
162 Consultations
0 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More