Antibiotic Bacteria Interaction: Dataset and Benchmarking - Inria - Institut national de recherche en sciences et technologies du numérique
Pré-Publication, Document De Travail Année : 2024

Antibiotic Bacteria Interaction: Dataset and Benchmarking

Résumé

This study introduces a dataset for drug-bacteria associations (DBA) that affects humans. Our contribution extends beyond merely curating the association matrix; we also conduct genomic similarity computations for all known bacteria impacting humans and assess structural similarities for all antibiotic drugs. This is a first of a kind dataset serving the fundamental goal of streamlining antibiotic repurposing for bacterial infections. we conducted thorough benchmarking on this dataset using state-of-the-art drug repurposing models. Furthermore, we applied this dataset to three case studies involving drug-resistant bacterial infections. Our results indicate that the dataset coupled with the algorithms are indeed effective for repurposing drugs with the potential for treating drug resistant bacterial infections.
Fichier principal
Vignette du fichier
thesis_2023.pdf (377.71 Ko) Télécharger le fichier
Origine Fichiers produits par l'(les) auteur(s)

Dates et versions

hal-04376907 , version 1 (07-01-2024)

Licence

Identifiants

  • HAL Id : hal-04376907 , version 1

Citer

Sayantika Chatterjee, Angshul Majumdar, Emilie Chouzenoux. Antibiotic Bacteria Interaction: Dataset and Benchmarking. 2023. ⟨hal-04376907⟩
27 Consultations
31 Téléchargements

Partager

More