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Journal Articles Bioinformatics Year : 2015

TiQuant: software for tissue analysis, quantification and surface reconstruction

Abstract

ABSTRACT Motivation: TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology. Availability: TiQuant is freely available for non-commercial use at msysbio.com/tiquant. Windows, OSX and Linux are supported. Contact: hoehme@uni-leipzig.de Supplementary information: Supplementary data are available at Bioinformatics online.

Dates and versions

hal-01257137 , version 1 (15-01-2016)

Identifiers

Cite

Adrian Friebel, Johannes Neitsch, Tim Johann, Seddik Hammad, Dirk Drasdo, et al.. TiQuant: software for tissue analysis, quantification and surface reconstruction. Bioinformatics, 2015, 31 (19), pp.3234-3236. ⟨10.1093/bioinformatics/btv346⟩. ⟨hal-01257137⟩
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