A quantification model of transient heat conduction was provided to simulate apple fruit temperature distribution in the cooling process. The model was based on the energy variation of apple fruit of different points. It took into account, heat exchange of representative elemental volume, metabolism heat and external heat. The following conclusions could be obtained: first, the quantification model can satisfactorily describe the tendency of apple fruit temperature distribution in the cooling process. Then there was obvious difference between apple fruit temperature and environment temperature. Compared to the change of environment temperature, a long hysteresis phenomenon happened to the temperature of apple fruit body. That is to say, there was a significant temperature change of apple fruit body in a period of time after environment temperature dropping. And then the change of temerature of apple fruit body in the cooling process became slower and slower. This can explain the time delay phenomenon of biology. After that, the temperature differences of every layer increased from centre to surface of apple fruit gradually. That is to say, the minimum temperature differences closed to centre of apple fruit body and the maximum temperature differences closed to the surface of apple fruit body. Finally, the temperature of every part of apple fruit body will tend to consistent and be near to the environment temperature in the cooling process. It was related to the metabolism heat of plant body at any time.