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authFullName_s : Alexander Schönhuth

An image representation based convolutional network for DNA classification

Bojian Yin , Marleen Balvert , Davide Zambrano , Alexander Schönhuth , Sander Bohte et al.
ICLR 2018 - 6th International Conference on Learning Representations, Apr 2018, Vancouver, Canada. pp.1-17
Conference papers hal-01964736v1
Image document

Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype

Bojian Yin , Marleen Balvert , Rick van Der Spek , Bas E Dutilh , Sander Bohte et al.
Bioinformatics, 2019, 35 (14), pp.i538-i547. ⟨10.1093/bioinformatics/btz369⟩
Journal articles hal-02344253v1

Dualities in Tree Representations

Rayan Chikhi , Alexander Schönhuth
Preprints, Working Papers, ... hal-01935566v1
Image document

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

Murray Patterson , Tobias Marschall , Nadia Pisanti , Leo van Iersel , Leen Stougie et al.
Journal of Computational Biology, 2015, 22 (6), pp.498-509. ⟨10.1089/cmb.2014.0157⟩
Journal articles hal-01225988v1
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Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting

Bashar Ibrahim , Ksenia Arkhipova , Arno C Andeweg , Susana Posada-Céspedes , François Enault et al.
Viruses, 2018, 10 (5), pp.256. ⟨10.3390/v10050256⟩
Journal articles hal-01964743v1
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Genome sequence analysis with MonetDB - A case study on Ebola virus diversity

Robin Cijvat , Stefan Manegold , Martin Kersten , Gunnar W. Klau , Alexander Schönhuth et al.
Datenbank-Spektrum, 2015, 15 (3), pp.185-191. ⟨10.1007/s13222-015-0198-x⟩
Journal articles hal-01248546v1
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Overlap graph-based generation of haplotigs for diploids and polyploids

Jasmijn A Baaijens , Alexander Schönhuth
Bioinformatics, 2019, 35 (21), pp.4281-4289. ⟨10.1093/bioinformatics/btz255⟩
Journal articles hal-02344853v1
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Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation Graphs

Jasmijn A Baaijens , Leen Stougie , Alexander Schönhuth
RECOMB 2020 - 24th International Conference on Research in Computational Molecular Biology, May 2020, Padova (Virtual), Italy. pp.221-222, ⟨10.1007/978-3-030-45257-5_14⟩
Conference papers hal-02955692v1
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MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants

Giulia Bernardini , Paola Bonizzoni , Luca Denti , Marco Previtali , Alexander Schönhuth et al.
iScience, 2019, 18, pp.20-27. ⟨10.1016/j.isci⟩
Journal articles hal-02344254v1
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De novo assembly of viral quasispecies using overlap graphs

Jasmijn A Baaijens , Amal Zine El Aabidine , Eric Rivals , Alexander Schönhuth
Genome Research, 2017, 27 (5), pp.835-848. ⟨10.1101/gr.215038.116⟩
Journal articles lirmm-01693168v1
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Machine Learning-Based Ensemble Recursive Feature Selection of Circulating miRNAs for Cancer Tumor Classification

Alejandro Lopez-Rincon , Lucero Mendoza-Maldonado , Marlet Martinez-Archundia , Alexander Schönhuth , Aletta Kraneveld et al.
Cancers, 2020, 12 (7), pp.1785. ⟨10.3390/cancers12071785⟩
Journal articles hal-03122107v1
Image document

Computational pan-genomics: status, promises and challenges

Tobias Marschall , Manja Marz , Thomas Abeel , Louis Dijkstra , Bas E. Dutilh et al.
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Journal articles hal-01390478v1