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The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes.
Adam Alexander Thil Smith
,
Eugeni Belda
,
Alain Viari
,
Claudine Médigue
,
David Vallenet
et al.
Journal articles
hal-00763496v1
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Searching for repeated words in a text allowing for mismatches and gaps
M-F. Sagot
,
V. Escalier
,
Alain Viari
,
H. Soldano
incollection, 1995, --, pp.87-100
Journal articles
hal-00698197v1
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BCL2 mutations do not confer adverse prognosis in follicular lymphoma patients treated with rituximab
Sarah Huet
,
Edith Szafer-Glusman
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Bruno Tesson
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Luc Xerri
,
Wayne J. Fairbrother
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Journal articles
hal-01524901v1
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SMAD2/3 mediate oncogenic effects of TGF-β in the absence of SMAD4
Adrien Bertrand-Chapel
,
Cassandre Caligaris
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Tanguy Fenouil
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Clara Savary
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Sophie Aires
et al.
Journal articles
hal-03915470v1
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CDYL2 Epigenetically Regulates MIR124 to Control NF-kB/STAT3-Dependent Breast Cancer Cell Plasticity
Maha Siouda
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Audrey D Dujardin
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Laetitia Barbollat-Boutrand
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Marco Mendoza-Parra
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Benjamin Gibert
et al.
Journal articles
hal-02956108v1
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Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men
Laurie Tonon
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Gaëlle Fromont
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Sandrine Boyault
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Emilie Thomas
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Anthony Ferrari
et al.
Journal articles
hal-01921597v1
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Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes
Laetitia Guillot
,
Ludovic Delage
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Alain Viari
,
Yves Vandenbrouck
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Emmanuelle Com
et al.
Journal articles
hal-01987197v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy
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Louis Bazire
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Sandra Ortiz-Cuaran
,
Sophie Deneuve
,
Janice Kielbassa
et al.
Journal articles
hal-01589514v1
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Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
Aurélie a G Gabriel
,
Joshua R Atkins
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Ricardo C C Penha
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Karl Smith-Byrne
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Valerie Gaborieau
et al.
Journal articles
hal-03914530v1
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Repurposing rotavirus vaccines for intratumoral immunotherapy can overcome resistance to immune checkpoint blockade
Tala Shekarian
,
Eva Sivado
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Anne-Catherine Jallas
,
Stephane Depil
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Janice Kielbassa
et al.
Journal articles
hal-02347852v1
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A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
Jing Liu
,
Daniela Ottaviani
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Meriem Sefta
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Céline Desbrousses
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Elodie Chapeaublanc
et al.
Journal articles
hal-03374490v1
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Differential strain-specific diagnosis of the heartwater agent: Ehrlichia ruminantium
N. Vachiery
,
G. Maganga
,
T. Lefrancois
,
Y. Kandassamy
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F. Stachurski
et al.
Journal articles
istex
hal-00287922v1
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Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters
Veasna Duong
,
Matthew R. Henn
,
Cameron Simmons
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Chantha Ngan
,
Bunthin Y
et al.
Journal articles
pasteur-00793267v1
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Bacterial syntenies: an exact approach with gene quorum.
Yves-Pol Deniélou
,
Marie-France Sagot
,
Frédéric Boyer
,
Alain Viari
Journal articles
hal-00746864v1
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Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
Laurence Despres
,
Renaud Stalinski
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Frédéric Faucon
,
Vincent Navratil
,
Alain Viari
et al.
Journal articles
hal-01996628v1
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Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort
Raphael Carapito
,
Richard Li
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Julie Helms
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Christine Carapito
,
Sharvari Gujja
et al.
Journal articles
hal-03436053v1
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A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy
,
Louis Bazire
,
Sandra Ortiz-Cuaran
,
Sophie Deneuve
,
Janice Kielbassa
et al.
Journal articles
hal-01599731v1
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Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices
M.-F. Sagot
,
Alain Viari
Conference papers
istex
hal-00435001v1
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Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
Marcel Smid
,
F. Germán Rodríguez-González
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Anieta M. Sieuwerts
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Roberto Salgado
,
Wendy J. C. Prager-van Der Smissen
et al.
Journal articles
hal-01388445v1
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The circular RNome of primary breast cancer
Marcel Smid
,
Saskia M Wilting
,
Katharina Uhr
,
F. Germán Rodríguez-González
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Vanja de Weerd
et al.
Journal articles
hal-02338656v1
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Bioinformatique et protéomique
Alain Viari
Interstices, 2004
Journal articles
hal-01350280v1
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Actualités en recherche en oncologie : l'essentiel du 4e Symposium International 2019 du Centre de Recherche en Cancérologie de Lyon
Frédéric Catez
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Nicole Dalla-Venezia
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Jean-Jacques Diaz
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Bertrand Dubois
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Anthony Ferrari
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Journal articles
hal-03004269v1
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PepLine: A Software Pipeline for High-Throughput Direct Mapping of Tandem Mass Spectrometry Data on Genomic Sequences
Myriam Ferro
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Marianne Tardif
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Erwan Reguer
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Romain Cahuzac
,
Christophe Bruley
et al.
Journal articles
hal-02072530v1
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Integration of data and methods for genome analysis.
Patrick Durand
,
Claudine Médigue
,
Anne Morgat
,
Yves Vandenbrouck
,
Alain Viari
et al.
Current Opinion in Drug Discovery and Development, 2003, 6 (3), pp.346-52
Journal articles
hal-02072584v1
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Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer
Virginie Marcel
,
Janice Kielbassa
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Virginie Marchand
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Kundhavai s Natchiar
,
Hermes Paraqindes
et al.
Journal articles
inserm-03103238v1
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The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Isabelle Chambaud
,
Roland Heilig
,
Stephane Ferris
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Valérie Barbe
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Delphine Samson
et al.
Journal articles
hal-02679458v1
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Characterization of Depressive Symptoms Trajectories After Breast Cancer Diagnosis in Women in France
Cécile Charles
,
Aurélie Bardet
,
Alicia Larive
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Philip Gorwood
,
Nicolas Ramoz
et al.
Journal articles
inserm-03650391v1
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Spatial modelling of plant diversity from high-throughput environmental dna sequence data
Angelika Studeny
,
Florence Forbes
,
Eric Coissac
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Alain Viari
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Celine Mercier
et al.
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Conference papers
hal-00933699v1
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Integrated analysis highlights APC11 protein expression as a likely new independent predictive marker for colorectal cancer
Youenn Drouet
,
Isabelle Treilleux
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Alain Viari
,
Sophie Léon
,
Mojgan Devouassoux-Shisheboran
et al.
Journal articles
hal-01920572v1
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Routine molecular screening of advanced refractory cancer patients: An analysis of the first 2490 patients of the ProfiLER study.
Olivier Tredan
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Veronique Corset
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Qing Wang
,
Romain Varnier
,
Camille Pacaud
et al.
Journal articles
hal-03811696v1
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