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Conference Papers Year : 2002

A new method of finding similarity regions in DNA sequences

Laurent Noé

Abstract

We propose a new method which tries to group together multiple seeds, in order to form rapidely large similarity regions instead of extending individual seeds. In a very restricted form, this idea has been used in late versions of Blast. Here we push it much further, and come up with a more sensitive approach, allowing for smaller seed sizes without considerable drop in time efficiency.
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Dates and versions

inria-00100859 , version 1 (26-09-2006)

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  • HAL Id : inria-00100859 , version 1

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Laurent Noé, Gregory Kucherov. A new method of finding similarity regions in DNA sequences. European Conference on Computational Biology - ECCB'2002, Oct 2002, Saarbrücken, Germany, pp.173-174. ⟨inria-00100859⟩
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