chromosome begin end evolutionary branch assignment chr1 10382322 10382387 dog chr1 26486662 26569387 rat chr1 28285759 28828520 rat chr1 30945490 30989892 rat chr1 31345916 31346810 rat chr1 33638060 33656109 dog chr1 42632503 42700754 rat chr1 42802976 42816972 rat chr1 43280417 43282311 dog chr1 46405611 46424650 rat chr1 46671064 46672023 rat chr1 53002764 53003646 dog chr1 58724788 58824831 rodents chr1 67322065 67340745 rodents chr1 67643659 67669889 dog chr1 68029762 68299332 rodents chr1 89449609 89455358 rodents chr1 93547361 93617179 rodents chr1 109923784 109923788 chimp chr1 111626612 111718815 dog chr1 113944998 113950242 dog chr1 143414745 143480575 primates chr1 143495190 143766399 macaca chr1 144691208 144707142 primates chr1 144850157 145574145 chimp chr1 150079680 150138541 dog chr1 154730502 154785551 dog chr1 155138987 155181424 rodents chr1 159534796 159534797 macaca chr1 163500024 163539665 dog chr1 174741344 174747547 macaca chr1 176541387 176542248 dog chr1 183696798 183696994 dog chr1 193615252 193644200 dog chr1 199929354 199932925 dog chr1 202654365 202704366 human chr1 202875289 202925290 human chr1 203923377 203964335 rodents chr1 212088559 212102414 dog chr1 219315299 219320434 dog chr1 219819876 220034266 dog chr1 220718832 220720533 rodents chr1 222285259 222301909 rodents chr1 223958034 224140979 primates chr1 225101534 225105289 human-chimp chr1 231650836 231655655 rodents chr1 232000378 232071892 rat chr1 236499572 236538078 primates chr1 243459499 243475849 primates chr1 244010649 244331228 reused(primates(2)) or reused(rodents,primates) ** chr1 244410383 245171647 reused(primates,dog(2),macaca) or reused(primates(2),dog,macaca) or reused(primates(3),macaca) ** chr2 3021848 3079602 primates chr2 4498811 4598970 primates chr2 5066435 5116465 primates chr2 9228999 9230671 rodents chr2 10241246 10248935 rodents chr2 26273595 26306118 mouse chr2 28936114 28945172 mouse chr2 35590415 35719973 rat chr2 42896358 42899012 dog chr2 53269306 53794595 rodents chr2 68567446 68606046 mouse chr2 68606114 68606218 rat chr2 70934473 70943148 rodents chr2 71225142 71233519 primates chr2 71289725 71317362 primates chr2 73920447 73921388 rodents chr2 86683138 86689149 macaca chr2 96462492 96573149 rodents chr2 96655628 96679346 dog chr2 106415035 106480136 rodents chr2 108462413 108524056 mouse chr2 110094438 110182237 primates chr2 113366289 113384367 rodents chr2 113853675 114152338 reused(primates,macaca,chimp) * chr2 126751075 126902351 rodents chr2 128502898 128537020 rodents chr2 130391226 130806004 primates chr2 130868634 130992293 dog chr2 131742662 132972122 reused(rodents,dog,macaca) * chr2 135436979 135450537 rat chr2 135659731 135702356 rat chr2 138302923 138787181 reused(rodents,macaca) * chr2 139378893 139764468 rodents chr2 153457198 153661715 dog chr2 161928817 162009569 rat chr2 162171119 162171448 rat chr2 188220878 188407385 rodents chr2 190041438 190131361 dog chr2 190329638 190355805 mouse chr2 196776223 196812973 mouse chr2 225023180 225049365 dog chr3 12858928 12898908 primates chr3 13970362 14075135 macaca chr3 15146252 15148274 human-chimp chr3 16293905 16322137 rodents chr3 20206781 21309322 rodents chr3 27684143 27728695 rodents chr3 32673907 32675028 dog chr3 33797103 33804035 dog chr3 36629861 36641543 macaca chr3 37236145 37244248 rodents chr3 38138755 38153772 rodents chr3 38345403 38345655 rodents chr3 42531796 42661652 rat chr3 43166170 43169544 dog chr3 43276982 43347425 rat chr3 43778800 43928574 rat chr3 44599403 44601047 dog chr3 44692060 44719393 dog chr3 46398263 46410340 rodents chr3 52321130 52324950 rodents chr3 57906237 57917134 rodents chr3 63984529 63992757 rodents chr3 75405289 75955840 reused(primates,macaca) * chr3 88281007 88281807 dog chr3 123262946 123289485 rat chr3 123518656 123531525 rat chr3 126855424 127207816 primates chr3 128287101 128299344 macaca chr3 130051673 130077740 primates chr3 130546458 130596928 primates chr3 131209949 131354487 human-chimp chr3 139810501 139817328 mouse chr3 140082330 140117097 mouse chr3 149570135 149852832 rodents chr3 150477153 150538520 rodents chr3 159978759 159979517 dog chr3 169313293 169339808 rodents chr3 171980253 172026393 mouse chr3 179587629 179604953 rodents chr3 180198709 180215220 dog chr3 184301008 184323100 rodents chr3 187891112 187914335 macaca chr3 194780060 195543474 dog chr3 196768577 196904128 human-chimp chr3 198828435 198882686 primates chr4 1137617 1149166 rodents chr4 1235131 1272688 dog chr4 1399720 1526031 rat chr4 4031670 4295739 human-chimp chr4 6332695 6439810 dog chr4 9423687 9431013 human-chimp chr4 17466081 17466422 dog chr4 36790205 37192293 rat chr4 37527459 37547880 rat chr4 41164366 41166536 dog chr4 44652250 44652655 chimp chr4 75977784 75998561 dog chr4 86315438 86320193 chimp chr4 86343858 86343878 macaca chr4 89357367 89411924 rat chr4 89438290 89498847 mouse chr4 89802419 89815031 rat chr4 95630279 95641878 rodents chr4 121210825 121237422 primates chr4 122814379 122833236 rodents chr4 141548883 141609208 rodents chr4 144761735 144788009 dog chr4 151254224 151324032 rodents chr4 163516523 163861670 rodents chr4 169768598 169770145 dog chr4 176804891 176904686 dog chr5 302422 310192 macaca chr5 1577127 1798156 reused(rat,macaca) * chr5 7963790 7967560 rodents chr5 14749797 14752973 dog chr5 18589071 18589079 chimp chr5 43097261 43522087 mouse chr5 54374839 54393614 dog chr5 74219206 74321738 dog chr5 95947176 95947193 chimp chr5 96172779 96207275 rodents chr5 98413847 98447516 rodents chr5 101899417 101914485 mouse chr5 102756311 102787215 mouse chr5 110090786 110287080 rodents chr5 112304457 112304458 rat chr5 112324382 112338725 reused(mouse,dog) * chr5 112875298 112877101 dog chr5 130391272 130510761 rodents chr5 134101365 134102033 rodents chr5 137119008 137252829 rodents chr5 138702021 138702658 dog chr5 147604994 147626392 primates chr5 150339019 150362137 rodents chr5 154326316 154326772 rodents chr5 171864765 171880795 mouse chr5 172657470 172669334 mouse chr5 173643549 173683571 rodents chr5 176931163 176940962 dog chr5 176972218 177171468 rodents chr5 180099707 180145767 dog chr6 20168608 20173203 rodents chr6 25911741 25953752 rat chr6 26266375 26393310 rat chr6 27882394 27883906 rat chr6 27948956 27988076 rat chr6 29153944 29163294 rodents chr6 30318022 30399913 dog chr6 33405197 33468587 mouse chr6 39166046 39177745 rodents chr6 39416186 39416186 rodents chr6 49863915 49889631 mouse chr6 52869456 52881311 rodents chr6 55892616 56331834 rodents chr6 74017117 74071724 rodents chr6 87836922 87849901 rodents chr6 100351747 100641522 rodents chr6 108413447 108413543 macaca chr6 116717761 116718612 dog chr6 117012303 117044057 rat chr6 117154193 117154372 mouse chr6 123193277 123214372 rodents chr6 127955215 128028223 rat chr6 131729656 132285923 dog chr6 135250025 135263632 rat chr6 150302291 150424464 rat chr6 155089958 155145523 mouse chr6 159321313 159322233 macaca chr6 159429809 160073444 mouse chr6 166773329 166784663 rat chr6 167522522 167539005 rodents chr6 167580809 167592531 dog chr6 167779801 167781278 dog chr6 169919268 169920120 dog chr7 2342932 2344692 reused(rodents,dog,macaca) * chr7 2485643 2485646 human-chimp chr7 4960258 4988961 macaca chr7 5661920 5663919 primates chr7 5670594 5750302 macaca chr7 6650815 6651386 human-chimp chr7 12310001 12334840 rodents chr7 19522099 19526654 rodents chr7 22371235 22624804 rodents chr7 23023699 23025736 rodents chr7 32876346 32906663 rodents chr7 36113503 36297204 rodents chr7 37558288 37571584 dog chr7 39436844 39446670 chimp chr7 43379171 45070256 reused(primates,chimp) * chr7 47791656 47799863 dog chr7 55416574 55636158 primates chr7 66191270 66240756 human-chimp chr7 71783766 71802732 human-chimp chr7 73632958 73721013 chimp chr7 74046399 74069236 chimp chr7 74561174 74641647 human-chimp chr7 76338545 76340728 human-chimp chr7 85118827 85122357 dog chr7 86471193 86612694 rat chr7 87124342 87128155 rat chr7 91139091 91165618 mouse chr7 91418734 91437174 mouse chr7 92329807 92375292 mouse chr7 97239993 97241658 human-chimp chr7 98892277 99114563 mouse chr7 99114566 99118389 rat chr7 99596646 99598509 rodents chr7 99995439 100355113 rat chr7 100632130 100725943 rat chr7 101924895 101993632 reused(primates,macaca) * chr7 104789825 104804016 rodents chr7 107366137 107366158 rodents chr7 107768799 107774792 dog chr7 111730098 111731746 rodents chr7 117382366 117386326 rat chr7 117539103 117545115 rat chr7 122769363 122770217 dog chr7 133749814 133759281 dog chr7 148170206 148198004 dog chr7 149990949 150011429 rodents chr7 156725109 156725122 rodents chr8 567096 586500 dog chr8 1748275 1749698 dog chr8 8085642 8128345 human-chimp chr8 9680491 9707682 primates chr8 12454661 12621761 human-chimp chr8 18003235 18036423 primates chr8 19755961 19772273 dog chr8 20222222 20230865 rodents chr8 29210129 29242886 primates chr8 36796491 36834948 rodents chr8 38050310 38081460 rodents chr8 42614070 42650650 rodents chr8 42779784 42809746 rodents chr8 50027626 50049307 rodents chr8 56725132 56812859 mouse chr8 62856437 62865125 rat chr8 64180462 64238589 rodents chr8 67477845 67478316 rat chr8 67478384 67479550 mouse chr8 74627624 74815124 rat chr8 75056510 75082239 rat chr8 76332504 76359208 rodents chr8 87115828 87123097 rat chr8 87125480 87126480 mouse chr8 97312161 97315365 rat chr8 97318765 97482998 mouse chr8 98817941 98834760 dog chr8 145880613 145919549 dog chr9 5843700 5877711 dog chr9 6655253 6733116 rodents chr9 27290620 27315074 rodents chr9 80027744 80223076 mouse chr9 83444691 83467637 rodents chr9 87711636 87726804 primates chr9 89707810 89758352 macaca chr9 91957503 92017242 primates chr9 94176528 94400432 primates chr9 97046992 97111288 human-chimp chr9 120575446 120605632 rodents chr9 121285642 121295686 dog chr9 124737625 124792755 macaca chr9 125030751 125041484 rodents chr9 127980229 127982646 macaca chr9 128134471 128141101 mouse chr9 128141171 128155456 rat chr9 131436242 131449400 rodents chr9 133095159 133097004 primates chr9 135625879 135626731 primates chr9 136897181 136905378 rodents chr9 137604824 137605871 rat chr9 137766296 137775978 rat chr10 5905617 5955569 mouse chr10 15496084 15509592 mouse chr10 19015856 19023074 dog chr10 27263532 27297413 primates chr10 27571252 27582401 primates chr10 29756879 29776491 primates chr10 30965850 31046209 primates chr10 32771235 32775097 primates chr10 35223820 35324106 rodents chr10 35561825 35658590 rodents chr10 37213276 38122353 reused(rat,macaca) * chr10 42472365 42490376 macaca chr10 45615237 46665057 reused(rodents,dog,macaca,chimp) * chr10 48232896 48339958 dog chr10 50807417 51218914 reused(rat,macaca) * chr10 51585710 51585710 human chr10 54240078 54820961 rodents chr10 59509197 59605907 dog chr10 67818208 67870852 rat chr10 70133739 70150660 rat chr10 70654440 70995548 rat chr10 71780294 71803242 rat chr10 71874732 71920216 rat chr10 74532979 74540171 rodents chr10 79407304 79409893 rat chr10 80930613 82009349 reused(primates,rat,dog,chimp(2)) or reused(primates,rodents,dog,chimp(2)) ** chr10 88966494 88987176 human-chimp chr10 91019744 91055682 dog chr10 98971923 99320950 rat chr10 101526262 101813834 rat chr10 102054228 102100983 rat chr10 121209506 121215108 rodents chr11 712491 787155 dog chr11 3371423 3573241 human-chimp chr11 4557017 4572762 rat chr11 4827498 4860608 rat chr11 17324102 17334794 rodents chr11 26111424 26164828 rodents chr11 30237125 30247752 dog chr11 34348552 34349789 rat chr11 34566248 34567093 rat chr11 44035582 44036413 dog chr11 55127493 55163348 rat chr11 55174956 55208324 rat chr11 56178775 56184678 macaca chr11 56272068 56273954 macaca chr11 57517509 57555011 rodents chr11 59275189 59336452 dog chr11 60003113 60036670 dog chr11 68466299 68483719 mouse chr11 70981497 71302100 human-chimp chr11 89072287 89457436 rodents chr11 100813765 100827815 dog chr11 106300424 106701056 rat chr11 106941850 106958073 rodents chr12 252415 253097 rodents chr12 2723685 2744849 primates chr12 7677714 7692524 primates chr12 8610281 8613782 primates chr12 9201034 9529779 rodents chr12 20854310 20855119 chimp chr12 32428705 32443872 rodents chr12 32946029 33008750 rodents chr12 53539433 53636151 rodents chr12 53699889 53943437 mouse chr12 54011756 54325592 reused(mouse,dog) * chr12 55497750 55504213 rat chr12 66667772 66690950 chimp chr12 74023739 74050431 mouse chr12 74112023 74152960 mouse chr12 74177245 74206198 dog chr12 85522973 85532480 macaca chr12 102847678 102853975 mouse chr12 103086625 103102949 dog chr12 106684857 106704935 primates chr12 108949586 108974071 primates chr12 119999262 120010147 primates chr12 131012082 131045398 rodents chr13 20713493 20731764 macaca chr13 22284962 22559479 rodents chr13 23794607 24082540 primates chr13 24461095 24493441 primates chr13 25547238 25682895 rodents chr13 25856454 27025285 rat chr13 27396625 27428586 rat chr13 33308577 33360692 rodents chr13 40155386 40201210 rodents chr13 40343659 40365249 primates chr13 48697061 48719587 rodents chr13 49068912 49090161 rodents chr13 51626110 51636636 primates chr13 51949042 52113307 primates chr13 101952790 102033165 rodents chr13 102345981 102354936 rodents chr13 113373978 113475243 reused(mouse,dog,macaca) * chr13 113651862 113761317 reused(mouse,dog,macaca) * chr14 19681678 19762701 reused(primates,macaca) * chr14 19767402 19781768 rat chr14 21252889 21261973 dog chr14 24220471 24221371 rodents chr14 51321781 51341806 rodents chr14 51691071 51758404 rodents chr14 57699648 57736366 rodents chr14 91101860 91109311 dog chr14 92680670 92713568 dog chr15 19917110 19924654 dog chr15 21232611 21344555 primates chr15 25963316 27008899 reused(primates,chimp) * chr15 28154986 28983293 reused(primates,chimp(2)) * chr15 30404112 30484618 reused(primates,chimp) * chr15 32456548 32721615 primates chr15 49085466 49137001 rodents chr15 49729798 49749101 rodents chr15 73815793 73878650 primates chr15 75967524 76072465 primates chr15 76478999 76507028 dog chr15 76790262 76830034 primates chr15 78062238 78070074 rodents chr15 80366676 80607861 primates chr15 80994478 80999730 macaca chr15 82629482 82915377 human-chimp chr15 83526370 83531082 human-chimp chr15 88617804 88622033 primates chr15 89367209 89392233 primates chr15 96895261 96897747 primates chr15 97383352 97384960 primates chr16 156265 175680 mouse chr16 2721374 2725728 human-chimp chr16 2861309 2862900 human-chimp chr16 3174625 3194201 mouse chr16 14635893 14651106 rat chr16 15435828 15605513 rat chr16 16223204 16482459 rodents chr16 18888460 18894255 primates chr16 19299605 19302350 primates chr16 21258714 21482490 reused(rodents,macaca) * chr16 21699916 21857180 reused(rodents,macaca) * chr16 22338120 22496413 reused(rodents,macaca) * chr16 23560718 23563142 macaca chr16 23612845 23613404 macaca chr16 28260102 28287942 human-chimp chr16 28534404 28582569 human-chimp chr16 29298953 29564371 human-chimp chr16 30125451 30263318 primates chr16 33714570 33928843 chimp chr16 45510352 45544381 dog chr16 54428574 54433583 rat chr16 57366106 57407652 dog chr16 65526283 65541124 rat chr16 68533607 68690194 reused(primates,macaca) * chr16 72919083 72920693 human-chimp chr16 80461913 80462057 rat chr16 80726940 80808554 rat chr17 633815 637840 rat chr17 1182146 1192305 primates chr17 2900484 2902036 macaca chr17 3077007 3110626 macaca chr17 3832337 3853748 dog chr17 4479449 4479735 primates chr17 6688815 6695277 primates chr17 7871717 7871720 chimp chr17 15363668 15400503 chimp chr17 15409480 15773362 reused(primates,macaca) * chr17 16657763 16657805 human chr17 18207693 18502177 reused(rodents,chimp,macaca) * chr17 18666101 18700087 reused(rodents,macaca) * chr17 19599285 19615215 rodents chr17 20811551 20842644 primates chr17 22359229 22549717 primates chr17 23855637 23860950 rat chr17 24114678 24205712 rat chr17 24682951 24733118 rat chr17 25878900 26131702 primates chr17 26356474 26401555 primates chr17 27352351 27482799 primates chr17 31886349 31889005 human-chimp chr17 33536607 33652121 primates chr17 41032805 41062618 reused(rat,dog) * chr17 41663982 41780380 reused(rat,dog) * chr17 42505590 42532347 reused(rat,dog) * chr17 42885448 42899573 human-chimp chr17 44975504 44975508 chimp chr17 53146006 53167902 rat chr17 55296010 55298699 rat chr17 55417847 55555315 human-chimp chr17 57670577 57727087 human-chimp chr17 60360240 60379382 primates chr17 63716840 63727002 primates chr17 63967387 64037876 rat chr17 67207532 67228978 dog chr18 585814 602849 rodents chr18 9962542 10192645 rodents chr18 10552225 10557007 macaca chr18 11513394 11581372 rodents chr18 12027965 12076602 macaca chr18 13122557 13265078 reused(rat,dog) * chr18 39327878 39609913 rodents chr18 43749041 43821128 dog chr18 46142952 46150366 dog chr18 46570851 46593780 dog chr18 52395818 52418923 rodents chr18 55072109 55082639 rat chr18 56424484 56484839 rodents chr18 64101591 64490896 rodents chr19 2764335 2785256 rodents chr19 2986302 3004685 dog chr19 3099833 3100464 dog chr19 3182154 3199952 dog chr19 4124053 4125551 rodents chr19 4175506 7063177 reused(primates,mouse(3)) or reused(primates,rodents,mouse(2)) or reused(primates,rodents(2),mouse) or reused(primates,rodents(3))** chr19 7786376 7788609 macaca chr19 8121721 8121780 macaca chr19 8233490 8272719 rodents chr19 8756588 8776231 primates chr19 11550776 11586312 rodents chr19 14550787 14687918 rodents chr19 15129195 15150736 mouse chr19 15970856 16014725 rodents chr19 16869556 16874454 rodents chr19 17660282 17689246 rodents chr19 17819888 17831478 rodents chr19 23232991 23481890 macaca chr19 23950855 24010720 macaca chr19 41002748 41008499 rat chr19 41239033 41240074 rat chr19 41329115 41364943 rat chr19 41421468 41524161 reused(mouse,chimp) * chr19 41901770 41933336 rodents chr19 42443761 42465356 chimp chr19 42746775 42819063 rodents chr19 44744499 44753284 chimp chr19 44840944 44866119 chimp chr19 46773828 47004081 rodents chr19 47707469 48529060 rodents chr19 51600810 51602248 dog chr19 51681015 51723948 dog chr19 53482204 53482996 rodents chr19 56841811 56841825 rodents chr19 58698423 58704105 rat chr19 58778550 59268980 mouse chr19 59473777 59543011 rat chr19 61517620 61576276 rodents chr19 61666521 61712033 rodents chr19 63075758 63160843 rodents chr19 63270152 63272052 rodents chr19 63610295 63638292 rat chr20 1395828 1406966 rodents chr20 23470915 23475920 dog chr21 14249224 14275447 chimp chr21 31267659 31283237 rat chr21 32314779 32348940 rat chr21 42311378 42361779 rodents chr21 43946897 44015839 mouse chr22 17227257 17384762 primates chr22 17549532 17692654 rodents chr22 18719486 18852612 primates chr22 19370845 19377101 human-chimp chr22 19798300 20040792 human-chimp chr22 20670207 20705501 dog chr22 20928500 20998108 dog chr22 21106901 22417378 reused(primates,mouse) or reused(primates,rodents) ** chr22 22581091 22630458 rat chr22 22912512 22977122 reused(rodents,dog) * chr22 23376238 23416163 human-chimp chr22 23947097 24188885 macaca chr22 24207844 24750941 rat chr22 25285094 25714804 rat chr22 27480888 27493146 rodents chr22 30325898 30346671 mouse chr22 31100059 31107853 primates chr22 31796961 31982887 rodents chr22 34277622 34286037 rodents chr22 37056914 37068605 rat chr22 37360411 37371205 rat chr22 41441311 41531322 rat chr22 41864822 41874577 rat chrX 160025 2756645 reused(rat(2),macaca) * chrX 7703921 9471376 rat chrX 9746123 9768522 rat chrX 23609250 23609967 rodents chrX 37107161 37124876 rodents chrX 47676588 47692154 rodents chrX 50043017 50101023 rat chrX 51267613 52801337 reused(rodents,chimp(2)) * chrX 55071102 55360135 mouse chrX 55432558 55440121 mouse chrX 107134862 107208156 rat chrX 114577422 114785851 mouse chrX 115059078 115209743 rat chrX 118769778 118784941 rodents chrX 118862906 118862926 rodents chrX 125608707 125815554 rat chrX 150460856 150517412 rat chrX 150710777 150759283 rat chrX 153081818 153097064 reused(rat,macaca) * chrX 153133991 153134783 macaca chrX 153328471 153450769 rat chrX 154338792 154537323 rat * reused(A(n),B(m),C) stands for breakpoint reused in the species A n times, in the species B m times, and in the species C once. ** reused breakpoint for which several equally parsimonious evolutionary scenarios are possible.