Stochastic P systems and the simulation of biochemical processes with dynamic compartments - Inria - Institut national de recherche en sciences et technologies du numérique Accéder directement au contenu
Article Dans Une Revue BioSystems Année : 2008

Stochastic P systems and the simulation of biochemical processes with dynamic compartments

Résumé

We introduce a sequential rewriting strategy for P systems based on Gillespie's stochastic simulation algorithm, and show that the resulting formalism of stochastic P systems makes it possible to simulate biochemical processes in dynamically changing, nested compartments. Stochastic P systems have been implemented using the spatially explicit programming language . Implementation examples include models of the Lotka-Volterra auto-catalytic system, and the life cycle of the Semliki Forest virus.

Dates et versions

hal-00645928 , version 1 (28-11-2011)

Identifiants

Citer

Antoine Spicher, Olivier Michel, Mikolaj Cieslak, Jean-Louis Giavitto, Przemyslaw Prusinkiewicz. Stochastic P systems and the simulation of biochemical processes with dynamic compartments. BioSystems, 2008, 91 (3), pp.458--472. ⟨10.1016/j.biosystems.2006.12.009⟩. ⟨hal-00645928⟩
66 Consultations
0 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More