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A first insight on the population structure of Mycobacterium tuberculosis complex as studied by spoligotyping and MIRU-VNTRs in Santiago, Chile.

María Elvira Balcells , Patricia García , Paulina Meza , Carlos Peña , Marcela Cifuentes et al.
PLoS ONE, 2015, 10 (2), pp.e0118007. ⟨10.1371/journal.pone.0118007⟩
Journal articles pasteur-01153988v1
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Analysis of Mycobacterium tuberculosis Genotypic Lineage Distribution in Chile and Neighboring Countries

Jaime Lagos , David Couvin , Loredana Arata , Javier Tognarelli , Carolina Aguayo et al.
PLoS ONE, 2016, 11 (8), pp.160434 - 160434. ⟨10.1371/journal.pone.0160434⟩
Journal articles pasteur-01652105v1
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Q fever epidemic in Cayenne, French Guiana, epidemiologically linked to three-toed sloth

Vincent Pommier De Santi , Sebastien Briolant , Aba Mahamat , Carole Ilcinkas , Denis Blanchet et al.
Comparative Immunology, Microbiology and Infectious Diseases, 2018, 56, pp.34-38. ⟨10.1016/j.cimid.2017.12.004⟩
Journal articles hal-01780643v1
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Heterogeneity among Mycobacterium ulcerans from French Guiana Revealed by Multilocus Variable Number Tandem Repeat Analysis (MLVA).

Yann Reynaud , Julie Millet , David Couvin , Nalin Rastogi , Christopher Brown et al.
PLoS ONE, 2015, 10 (2), pp.e0118597. ⟨10.1371/journal.pone.0118597⟩
Journal articles pasteur-01133543v1
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Genetic diversity of Mycobacterium tuberculosis complex strains isolated from patients with pulmonary tuberculosis in Anambra State, Nigeria.

Gertrude N Uzoewulu , Lovett Lawson , Ibeh S Nnanna , Nalin Rastogi , Madhu Goyal et al.
International Journal of Mycobacteriology, 2016, 5 (1), pp.74-79. ⟨10.1016/j.ijmyco.2015.06.008⟩
Journal articles pasteur-01304573v1
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New Mycobacterium tuberculosis Beijing clonal complexes in China revealed by phylogenetic and Bayesian population structure analyses of 24-loci MIRU-VNTRs

Chao Zheng , Yann Reynaud , Changsong Zhao , Thierry Zozio , Song Li et al.
Scientific Reports, 2017, Sci Rep. 2017 Jul 20;7(1):6065., 7 (1), ⟨10.1038/s41598-017-06346-1⟩
Journal articles pasteur-01583207v1
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Experimental Assessment of Zika Virus Mechanical Transmission by Aedes aegypti

Antoine Boullis , Nadège Cordel , Cecile Herrmann-Storck , Anubis Vega-Rúa
Viruses, 2019, 11 (8), pp.695. ⟨10.3390/v11080695⟩
Journal articles hal-02571521v1
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Population structure of multidrug-resistant Mycobacterium tuberculosis clinical isolates in Colombia

Juan Germán Rodríguez-Castillo , Claudia Llerena , Lorena Argoty-Chamorro , Julio Guerra , David Couvin et al.
Tuberculosis, 2020, 125, pp.102011. ⟨10.1016/⟩
Journal articles pasteur-03092680v1
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GloPID-R report on chikungunya, o'nyong-nyong and Mayaro virus, part 2: Epidemiological distribution of o'nyong-nyong virus

L. Pezzi , A.D. Labeaud , C.B. B Reusken , J.F. Drexler , N. Vasilakis et al.
Antiviral Research, 2019, 172, pp.104611. ⟨10.1016/j.antiviral.2019.104611⟩
Journal articles pasteur-02305872v1
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Antimicrobial use and resistance in Escherichia coli from healthy food-producing animals in Guadeloupe

Gaëlle Gruel , Arantxa Sellin , Hélène Riveiro , Matthieu Pot , Sébastien Breurec et al.
BMC Veterinary Research, 2021, 17 (1), pp.116. ⟨10.1186/s12917-021-02810-3⟩
Journal articles inserm-03313803v1
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Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe

Matthieu Pot , Yann Reynaud , David Couvin , Alexis Dereeper , Séverine Ferdinand et al.
Antibiotics, 2022, 11 (10), pp.1443. ⟨10.3390/antibiotics11101443⟩
Journal articles hal-03970314v1
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An Optimized Most Probable Number (MPN) Method to Assess the Number of Thermophilic Free-Living Amoebae (FLA) in Water Samples

Mirna Moussa , Isabel Marcelino , Vincent Richard , Jérôme Guerlotté , Antoine Talarmin et al.
Journal articles hal-02619496v1
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Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics

Chenyan Shi , Leen Beller , Ward Deboutte , Kwe Claude Yinda , Leen Delang et al.
Microbiome, 2019, 7, pp.121. ⟨10.1186/s40168-019-0734-2⟩
Journal articles pasteur-02278678v1
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Clonal expansion across the seas as seen through CPLP-TB database: A joint effort in cataloguing Mycobacterium tuberculosis genetic diversity in Portuguese-speaking countries

João Perdigão , Carla Silva , Jaciara Diniz , Catarina Pereira , Diana Machado et al.
Infection, Genetics and Evolution, 2019, Molecular aspects of mycobacteril infections, 72, pp.44-58. ⟨10.1016/j.meegid.2018.03.011⟩
Journal articles pasteur-01986661v1
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Genetic evidence for a worldwide chaotic dispersion pattern of the arbovirus vector, Aedes albopictus.

Mosè Manni , Carmela R Guglielmino , Francesca Scolari , Anubis Vega-Rúa , Anna-Bella Failloux et al.
PLoS Neglected Tropical Diseases, 2017, 11 (1), pp.e0005332. ⟨10.1371/journal.pntd.0005332⟩
Journal articles pasteur-01468191v1
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Seventh Pandemic Vibrio cholerae O1 Sublineages, Central African Republic

Sebastien Breurec , Thierry Franck , Elisabeth Njamkepo , Jean-Robert Mbecko , Jean Rauzier et al.
Emerging Infectious Diseases, 2021, 27 (1), pp.262 - 266. ⟨10.3201/eid2701.200375⟩
Journal articles pasteur-03705846v1
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Culex mosquitoes are experimentally unable to transmit Zika virus.

Fadila Amraoui , Célestine Atyame Nten , Anubis Vega-Rúa , Ricardo Lourenço-De-Oliveira , Marie Vazeille et al.
Eurosurveillance, 2016, 21 (35), ⟨10.2807/1560-7917.ES.2016.21.35.30333⟩
Journal articles pasteur-01473720v1
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Predictive factors for a one-year improvement in nontuberculous mycobacterial pulmonary disease: An 11-year retrospective and multicenter study

Gilbert Cadelis , Rodolphe Ducrot , Arnaud Bourdin , Nalin Rastogi
PLoS Neglected Tropical Diseases, 2017, PLoS Negl Trop Dis. 2017 Aug 7;11(8):e0005841, ⟨10.1371/journal.pntd.0005841⟩
Journal articles pasteur-01581674v1
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Wide Distribution and Specific Resistance Pattern to Third-Generation Cephalosporins of Enterobacter cloacae Complex Members in Humans and in the Environment in Guadeloupe (French West Indies)

Matthieu Pot , Yann Reynaud , David Couvin , Célia Ducat , Séverine Ferdinand et al.
Frontiers in Microbiology, 2021, 12, pp.628058. ⟨10.3389/fmicb.2021.628058⟩
Journal articles hal-03695552v1
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Antimicrobial Resistance in Wildlife in Guadeloupe (French West Indies): Distribution of a Single blaCTX–M–1/IncI1/ST3 Plasmid Among Humans and Wild Animals

Stéphanie Guyomard-Rabenirina , Yann Reynaud , Matthieu Pot , Emmanuel Albina , David Couvin et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01524⟩
Journal articles hal-02928330v1
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A New High-Throughput Tool to Screen Mosquito-Borne Viruses in Zika Virus Endemic/Epidemic Areas

Sara Moutailler , Léna Yousfi , Laurence Mousson , Elodie Devillers , Marie Vazeille et al.
Viruses, 2019, 11 (10), pp.904. ⟨10.3390/v11100904⟩
Journal articles pasteur-02325649v1
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Vector competence of Aedes albopictus populations for chikungunya virus is shaped by their demographic history

Anubis Vega-Rúa , Michele Marconcini , Yoann Madec , Mosè Manni , Davide Carraretto et al.
Communications Biology, 2020, ⟨10.1038/s42003-020-1046-6⟩
Journal articles pasteur-02883538v1
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Zika vector competence data reveals risks of outbreaks: the contribution of the European ZIKAlliance project

Thomas Obadia , Gladys Gutierrez-Bugallo , Veasna Duong , Ana Nuñez , Rosilainy Fernandes et al.
Nature Communications, 2022, 13 (1), pp.4490. ⟨10.1038/s41467-022-32234-y⟩
Journal articles pasteur-03744692v1
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Severe Thrombocytopenia after Zika Virus Infection, Guadeloupe, 2016.

Timothée Boyer Chammard , Kinda Schepers , Sébastien Breurec , Thierry Messiaen , Anne-Laure Destrem et al.
Emerging Infectious Diseases, 2017, 23 (4), pp.696-698. ⟨10.3201/eid2304.161967⟩
Journal articles inserm-01520126v1
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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

Sebastien Breurec , Alexis Criscuolo , Laure Diancourt , Olaya Rendueles , Mathias Vandenbogaert et al.
Scientific Reports, 2016, 6, pp.30379. ⟨10.1038/srep30379⟩
Journal articles hal-02613124v1
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Reptiles in Guadeloupe (French West Indies) are a reservoir of major human Salmonella enterica serovars

Stéphanie Guyomard-Rabenirina , François-Xavier Weill , Simon Le Hello , Sylvaine Bastian , Franck Berger et al.
PLoS ONE, 2019, 14 (7), pp.e0220145. ⟨10.1371/journal.pone.0220145⟩
Journal articles inserm-02273207v1
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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

Christine Pourcel , Marie Touchon , Nicolas Villeriot , Jean-Philippe Vernadet , David Couvin et al.
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Journal articles hal-02990278v1
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Importance of mosquito "quasispecies" in selecting an epidemic arthropod-borne virus.

Marie Vazeille , Karima Zouache , Anubis Vega-Rúa , Jean-Michel Thiberge , Valérie Caro et al.
Scientific Reports, 2016, 6, pp.29564. ⟨10.1038/srep29564⟩
Journal articles pasteur-01457825v1
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Prevalence of Latin-American-Mediterranean genetic family in population structure of Mycobacterium tuberculosis in Bulgaria

Violeta Valcheva , Nalin Rastogi , Igor Mokrousov
International Journal of Mycobacteriology, 2015, 4 (3), pp.191-195. ⟨10.1016/j.ijmyco.2015.04.003⟩
Journal articles pasteur-01154025v2
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Interaction between rpsL and gyrA mutations affects the fitness and dual resistance of Mycobacterium tuberculosis clinical isolates against streptomycin and fluoroquinolones.

Honghu Sun , Jumei Zeng , Song Li , Pengkuan Liang , Chao Zheng et al.
Infection and Drug Resistance, 2018, 11, pp.431-440. ⟨10.2147/idr.s152335⟩
Journal articles pasteur-01986663v1