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Deposit type : Notice

Scalable and exhaustive screening of metabolic functions carried out by microbial consortia

Clémence Frioux , Enora Fremy , Camille Trottier , Anne Siegel
Bioinformatics, 2018, 34 (17), pp.i934 - i943. ⟨10.1093/bioinformatics/bty588⟩
Journal articles hal-01871600v1

Super Short Reversals on Both Gene Order and Intergenic Sizes

Andre Rodrigues Oliveira , Géraldine Jean , Guillaume Fertin , Ulisses Dias , Zanoni Dias et al.
Advances in Bioinformatics and Computational Biology - 11th Brazilian Symposium on Bioinformatics -- BSB 2018, Oct 2018, Niteroi, Brazil. pp.14--25
Conference papers hal-02081164v1

Sorting signed circular permutations by super short operations

Andre Oliveira , Guillaume Fertin , Ulisses Dias , Zanoni Dias
Algorithms for Molecular Biology, 2018, 13 (1), ⟨10.1186/s13015-018-0131-6⟩
Journal articles hal-01911093v1

Prefix and suffix reversals on strings

Guillaume Fertin , Loïc Jankowiak , Géraldine Jean
Discrete Applied Mathematics, 2018, 246, pp.140 - 153. ⟨10.1016/j.dam.2017.07.031⟩
Journal articles hal-01911089v1


Riccardo Dondi , Guillaume Fertin , Giancarlo Mauri
Theoretical Computer Science, 717, Elsevier, 2018, Theoretical Computer Science, ⟨10.1016/j.tcs.2018.02.016⟩
Proceedings hal-01911085v1

From plankton functional traits to marine ecosystem functions: Assessing functional diversity of plankton communities from high throughput -omics data and its impact on oceanic biogeochemical cycles

Sakina-Dorothée Ayata , E. Faure , A.-S. Benoiston , F. Not , Olivier Aumont et al.
Functional Ecology Conference, 2018, Nancy, France
Conference papers hal-04024046v1

Les microbiomes de l'océan : une démarche à haut débit pour une compréhension globale et systémique

Lucie Bittner , Lionel Guidi , Samuel Chaffron , Damien Eveillard
Laurent Palka. Microbiodiversité : un nouveau regard, 161 - 185, editions matériologiques, 2018
Book sections hal-01996304v1

Proteomics Versus Clinical Data and Stochastic Local Search Based Feature Selection for Acute Myeloid Leukemia Patients’ Classification

Lokmane Chebouba , Dalila Boughaci , Carito Guziolowski
Journal of Medical Systems, 2018, 42 (7)
Journal articles hal-01988416v1

Sorting signed permutations by reversals using link-cut trees

Irena Rusu
Information Processing Letters, 2018, 132, pp.44-48
Journal articles hal-01983332v1

The S-labeling problem: An algorithmic tour

Guillaume Fertin , Irena Rusu , Stéphane Vialette
Discrete Applied Mathematics, 2018, 246, pp.49-61. ⟨10.1016/j.dam.2017.07.036⟩
Journal articles hal-01710032v1

On the Maximum Colorful Arborescence Problem and Color Hierarchy Graph Structure

Guillaume Fertin , Julien Fradin , Christian Komusiewicz
Annual Symposium on Combinatorial Pattern Matching -- CPM 2018, Jul 2018, Qingdao, China
Conference papers hal-02081156v1

Optimal odd gossiping

Guillaume Fertin , Joseph Peters
Discrete Applied Mathematics, 2018, 247, pp.53 - 69. ⟨10.1016/j.dam.2018.03.033⟩
Journal articles hal-01911088v1

Sorting permutations and binary strings by length-weighted rearrangements

Guillaume Fertin , Carla Negri Lintzmayer , Zanoni Dias
Theoretical Computer Science, 2018, 715, pp.35 - 59. ⟨10.1016/j.tcs.2018.01.012⟩
Journal articles hal-01705181v1

Matching algorithms for assigning orthologs after genome duplication events

Guillaume Fertin , Falk Hüffner , Christian Komusiewicz , Manuel Sorge
Computational Biology and Chemistry, 2018, 74, pp.379 - 390. ⟨10.1016/j.compbiolchem.2018.03.015⟩
Journal articles hal-01911090v1

Common intervals and permutation reconstruction from MinMax -betweenness constraints

Léo Pelletier , Irena Rusu
Journal of Discrete Algorithms, 2018, 49, pp.8-26
Journal articles hal-01983336v1

Assessing functional diversity of plankton communities from high throughput –omics data

Sakina-Dorothée Ayata , E. Faure , A.-S. Benoiston , O. Silva , V. Sonnet et al.
Colloque de Bilan et de Prospective du programme LEFE, Mar 2018, Clermon-Ferrand, France. 2018
Conference poster hal-04021818v1

Modelling the complexity of plankton communities exploiting omics potential: From present challenges to an integrative pipeline

Domenico d'Alelio , Damien Eveillard , Victoria Coles , Luigi Caputi , Maurizio Ribera D’alcalà et al.
Current Opinion in Systems Biology, 2018, ⟨10.1016/j.coisb.2018.10.003⟩
Journal articles hal-01909434v1

Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data

Misbah Razzaq , Roland Kaminski , Javier J Romero , Torsten Schaub , Jérémie Bourdon et al.
pp.59-74, 2018
Books hal-01988432v1

Biological pump processes are driven by microbial networks in the global oligotrophic ocean

A.S. Benoiston , E. Eveillard , S. Chaffron , S. Ayata , C. Bowler et al.
ISME17, Aug 2018, Leipzig, Germany. 2018
Conference poster hal-04021817v1