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Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

Julie Laniau , Clémence Frioux , Jacques Nicolas , Caroline Baroukh , Maria-Paz Cortés et al.
PeerJ, 2017, 5, pp.e3860. ⟨10.7717/peerj.3860⟩
Journal articles hal-01635688v1
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Algorithms for computing the double cut and join distance on both gene order and intergenic sizes

Guillaume Fertin , Géraldine Jean , Eric Tannier
Algorithms for Molecular Biology, 2017, 12, 16 (11 p.). ⟨10.1186/s13015-017-0107-y⟩
Journal articles hal-01533200v1
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Logic programming reveals alteration of key transcription factors in multiple myeloma

Bertrand Miannay , Stéphane Minvielle , Olivier Roux , Pierre Drouin , Hervé Avet-Loiseau et al.
Scientific Reports, 2017, 7 (1), pp.9257. ⟨10.1038/s41598-017-09378-9⟩
Journal articles inserm-01611119v1
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Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

François Thomas , Philippe Bordron , Damien Eveillard , Gurvan Michel
Frontiers in Microbiology, 2017, 8, pp.article 1808. ⟨10.3389/fmicb.2017.01808⟩
Journal articles hal-01613034v1
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Modeling Metabolic Networks and their Environment Interaction

Marko Budinich Abarca
Bioinformatics [q-bio.QM]. Université de Nantes, 2017. English. ⟨NNT : ⟩
Theses tel-01713629v1
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Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming

Louis Fippo Fitime , Olivier F. Roux , Carito Guziolowski , Loïc Paulevé
Algorithms for Molecular Biology, 2017, 12 (1), pp.19. ⟨10.1186/s13015-017-0110-3⟩
Journal articles hal-01566380v1
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Beyond Adjacency Maximization: Scaffold Filling for New String Distances

Laurent Bulteau , Guillaume Fertin , Christian J Komusiewicz
28th Annual Symposium on Combinatorial Pattern Matching, 2017, Warsaw, Poland. ⟨10.4230/LIPIcs.CPM.2017.27⟩
Conference papers hal-01615671v1
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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

Sylvain Prigent , Clémence Frioux , Simon M Dittami , Sven Thiele , Abdelhalim Larhlimi et al.
PLoS Computational Biology, 2017, 13 (1), pp.32. ⟨10.1371/journal.pcbi.1005276⟩
Journal articles hal-01449100v1
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Regulation and signalization graph assembly through Linked Open Data

Marie Lefebvre , Jérémie Bourdon , Carito Guziolowski , Alban Gaignard
JOBIM 2017, Jul 2017, Lille, France
Conference papers hal-01768420v1