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Permutation Pattern Matching for Doubly Partially Ordered Patterns

Laurent Bulteau , Guillaume Fertin , Vincent Jugé , Stéphane Vialette
33rd Annual Symposium on Combinatorial Pattern Matching, Hideo Bannai and Jan Holub, Jun 2022, Prague, Czech Republic
Conference papers hal-03624311v1
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Microbial community functioning during plant litter decomposition

Simon Schroeter , Damien Eveillard , Samuel Chaffron , Johanna Zoppi , Bernd Kampe et al.
Scientific Reports, 2022, 12 (1), pp.7451. ⟨10.1038/s41598-022-11485-1⟩
Journal articles hal-03781927v1
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L'Inférence de Protéines à travers le Modèle Peptide Quantity Assignment

Emile Benoist , Guillaume Fertin , Géraldine Jean
23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, INSA Lyon, Feb 2022, Villeurbanne - Lyon, France
Conference papers hal-03595308v1
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Models and methods for genome-resolved metagenomics

Benjamin Churcheward
Computer Science [cs]. Nantes Université, 2022. English. ⟨NNT : ⟩
Theses tel-03983215v1
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Global observation of plankton communities from space

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé et al.
2022
Preprints, Working Papers, ... hal-03855690v1
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Contribution of genome‐scale metabolic modelling to niche theory

Antoine Régimbeau , Marko Budinich , Abdelhalim Larhlimi , Juan José Pierella Karlusich , Olivier Aumont et al.
Ecology Letters, 2022, 25 (6), pp.1352-1364. ⟨10.1111/ele.13954⟩
Journal articles hal-03635158v1
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Contributions des entrées sur les sorties pour les réseaux métaboliques sur génomes entiers: performances et utilisation pour des études en nutrition humaine

Oumarou Abdou Arbi , Anne Siegel , Jérémie Bourdon
CARI 2022 - Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, Oct 2022, Yaoundé, Cameroun. pp.1-12
Conference papers hal-03689107v2
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Maternal prebiotic supplementation impacts colitis development in offspring mice

Amélie Lê , Amandine Selle , Philippe Aubert , Tony Durand , Carole Brosseau et al.
Frontiers in nutrition, 2023, 9, ⟨10.3389/fnut.2022.988529⟩
Journal articles hal-03930453v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics

Benjamin Churcheward , Maxime Millet , Audrey Bihouée , Guillaume Fertin , Samuel Chaffron et al.
mSystems, 2022, 7 (4), ⟨10.1128/msystems.00432-22⟩
Journal articles hal-03781944v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas et al.
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Journal articles hal-03781942v1
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Disentangling temporal associations in marine microbial networks

Ina Maria Deutschmann , Anders Krabberød , Francisco Latorre , Erwan Delage , Cèlia Marrasé et al.
2022
Preprints, Working Papers, ... hal-03781901v1
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Allergic Sensitization Driving Immune Phenotyping and Disease Severity in a Mouse Model of Asthma

Eléonore Dijoux , Martin Klein , Barbara Misme-Aucouturier , Marie-Aude Chemina , Marion de Carvalho et al.
Allergy, Asthma & Immunology Research, 2023, 15 (2), pp.e9. ⟨10.4168/aair.2023.15.e9⟩
Journal articles hal-03953921v1
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Seipin localizes at endoplasmic-reticulum-mitochondria contact sites to control mitochondrial calcium import and metabolism in adipocytes

Yoann Combot , Veijo T. Salo , Gilliane Chadeuf , Maarit Hölttä , Katharina Ven et al.
Cell Reports, 2022, 38 (2), pp.110213. ⟨10.1016/j.celrep.2021.110213⟩
Journal articles hal-03534214v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont et al.
eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩
Journal articles hal-02399723v2
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Insights into biotic and abiotic modulation of ocean mesopelagic communities

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Karlusich et al.
2022
Preprints, Working Papers, ... hal-03166899v1
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Seasonal dynamics of marine protist communities in tidally mixed coastal waters

Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans et al.
Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩
Journal articles hal-03781932v1
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Diversity and ecological footprint of Global Ocean RNA viruses

Guillermo Dominguez-Huerta , Ahmed Zayed , James Wainaina , Jiarong Guo , Funing Tian et al.
Science, 2022, 376 (6598), pp.1202-1208. ⟨10.1126/science.abn6358⟩
Journal articles hal-03781935v1
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Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed Zayed , James Wainaina , Guillermo Dominguez-Huerta , Eric Pelletier , Jiarong Guo et al.
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Journal articles hal-03781924v1
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Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae

Udita Chandola , Camille Trottier , Marinna Gaudin , Erik Manirakiza , Samuel Menicot et al.
2022
Preprints, Working Papers, ... hal-03781940v1