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The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti

Francesco Pini , Benjamin Frage , Lorenzo Ferri , Nicole J. de Nisco , Saswat S. Mohapatra et al.
Molecular Microbiology, 2013, 90 (1), pp.54 - 71. ⟨10.1111/mmi.12347⟩
Journal articles hal-02646296v1

Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells

Abdou Akkouche , Thomas Grentzinger , Marie Fablet , Claudia Armenise , Nelly Burlet et al.
EMBO Reports, 2013, 14 (5), pp.458-64. ⟨10.1038/embor.2013.38⟩
Journal articles hal-00850319v1

The CycADS annotation database system to support the development and update of enriched BioCyc databases: development of ad hoc BioCyc DB (AcypiCyc, ArthropodaCyc

Patrice Baa-Puyoulet , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay , Federica Calevro et al.
8. Meeting of the International Aphid Genomics Consortium, Jan 2013, Harpenden, United Kingdom
Conference poster hal-03506707v1

Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family

Maria Cristina Machado Motta , Allan Cezar de Azevedo Martins , Silvana Sant'Anna de Souza , Carolina Moura Costa Catta-Preta , Rosane Silva et al.
PLoS ONE, 2013, 8 (4), pp.e60209. ⟨10.1371/journal.pone.0060209⟩
Journal articles hal-00846833v1

Using cascading Bloom filters to improve the memory usage for de Brujin graphs

Kamil Salikhov , Gustavo Sacomoto , Gregory Kucherov
Workshop on Algorithms in Bioinformatics, Sep 2013, Sophia Antipolis, France. 13p
Conference papers hal-00824697v1

The Drosophila Su(var)3-7 gene is required for oogenesis and female fertility, genetically interacts with piwi and aubergine, but impacts only weakly transposon silencing.

Denis Basquin , Anne Spierer , Flora Begeot , Dmitry E Koryakov , Anne-Laure Todeschini et al.
PLoS ONE, 2014, 9 (5), pp.e96802
Journal articles hal-01092623v1

Spatial modelling of plant diversity from high-throughput environmental dna sequence data

Angelika Studeny , Florence Forbes , Eric Coissac , Alain Viari , Celine Mercier et al.
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Conference papers hal-00933699v1

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data

Gustavo Akio Tominaga Sacomoto , Vincent Lacroix , Marie-France Sagot
Workshop on Algorithms in Bioinformatics (WABI), Sep 2013, Nice, France
Conference papers hal-00842982v1

Learning the local Bayesian network structure around the ZNF217 oncogene in breast tumours

Emmanuel Prestat , Sérgio Rodrigues de Morais , Julie A Vendrell , Aurélie Thollet , Christian Gautier et al.
Computers in Biology and Medicine, 2013, 43 (4), pp.334-341. ⟨10.1016/j.compbiomed.2012.12.002⟩
Journal articles hal-00851231v1

Navigating in a Sea of Repeats in RNA-seq without Drowning

Gustavo Sacomoto , Blerina Sinaimeri , Camille Marchet , Vincent Miele , Marie-France Sagot et al.
WABI 2014 - 14th International Workshop on Algorithms in Bioinformatics, Sep 2014, Wroclaw, Poland. pp.82-96, ⟨10.1007/978-3-662-44753-6_7⟩
Conference papers hal-01079947v1

New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data

Alice Julien-Laferriere , Gustavo Sacomoto , Rayan Chikhi , Erwan Scaon , David P. Parsons et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2013, Toulouse, France
Conference papers hal-02069363v1

Optimal Listing of Cycles and st-Paths in Undirected Graphs

Etienne E. Birmelé , Rui Ferreira , Roberto Grossi , Andrea Marino , Nadia Pisanti et al.
24th Annual ACM-SIAM Symposium on Discrete Algorithms, Jan 2013, New Orleans, United States
Conference papers hal-00751345v1

Telling Stories Fast

Michele Borassi , Pierluigi Crescenzi , Vincent Lacroix , Andrea Marino , Marie-France Sagot et al.
12th International Symposium Experimental Algorithms (SEA), Jun 2013, Rome, Italy. pp.200-211
Conference papers hal-00835201v1

Wavelet-based clustering for mixed-effects functional models in high dimension

Madison Giacofci , Sophie Lambert-Lacroix , Guillemette Marot , Franck Picard
Biometrics, 2013, 69 (1), pp.31-40. ⟨10.1111/j.1541-0420.2012.01828.x⟩
Journal articles istex hal-00782458v1

MeDuSa: A multi-draft based scaffolder.

Emanuele Bosi , Beatrice Donati , Marco Galardini , Sara Brunetti , Marie-France Sagot et al.
Bioinformatics, 2015, pii: btv171 [Epub ahead of print]. ⟨10.1093/bioinformatics/btv171⟩
Journal articles hal-01139506v1

« ArthropodaCyc » : une collection de bases de données enrichies à l’aide de CycADS pour étudier et comparer le métabolisme des arthropodes.

Patrice Baa-Puyoulet , Stefano Colella , Augusto Vellozo , Jaime Huerta-Cepas , Gérard Febvay et al.
17. Colloque de Biologie de l’Insecte - CBI-2013, Oct 2013, Montpellier, France
Conference poster hal-03506713v1

On the genetic architecture of cytoplasmic incompatibility: inference from phenotypic data

Igor Nor , Jan Engelstädter , Olivier Duron , Max Reuter , Marie-France Sagot et al.
American Naturalist, 2013, 182 (1), pp.15-24. ⟨10.1086/670612⟩
Journal articles hal-00837003v1

Efficiently listing bounded length st-paths

Romeo Rizzi , Gustavo Sacomoto , Marie-France Sagot
Twenty-Fifth International Workshop on Combinatorial Algorithms (IWOCA 2014), Sep 2014, Duluth, Minnesota, France. in press
Conference papers hal-01091924v1