Finding Long and Multiple Repeats with Edit Distance
Maria Federico
,
Pierre Peterlongo
,
Nadia Pisanti
,
Marie-France Sagot
The Prague Stringology Conference 2011 , Aug 2011, Prague, Czech Republic
Conference papers
inria-00608208v1
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Structural and dynamical analysis of biological networks.
Cecilia C. Klein
,
Andrea Marino
,
Marie-France Sagot
,
Paulo Vieira Milreu
,
Matteo Brilli
et al.
Journal articles
hal-00737455v1
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NGS without a reference genome, comparison and visualisation of non assembled data
Vincent Lacroix
Statistical Methods for Post-Genomic Data (SMPGD) , 2011, Paris, France
Conference papers
hal-00748787v1
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The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti
Francesco Pini
,
Benjamin Frage
,
Lorenzo Ferri
,
Nicole J. de Nisco
,
Saswat S. Mohapatra
et al.
Journal articles
hal-02646296v1
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Wolbachia detection: an assessment of standard PCR protocols.
P. M. Simões
,
G. Mialdea
,
D. Reiss
,
Marie-France Sagot
,
S. Charlat
et al.
Journal articles
istex
hal-00746848v1
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Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection.
Antoine Branca
,
Bruno Pierre Le Ru
,
Fabrice Vavre
,
Jean-François Silvain
,
Stéphane Dupas
et al.
Journal articles
istex
hal-00746863v1
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Transposon proliferation in an asexual parasitoid.
Ken Kraaijeveld
,
Brechtje Zwanenburg
,
Benjamin Hubert
,
Cristina Vieira
,
Sylvia de Pater
et al.
Journal articles
istex
hal-00850325v1
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The CycADS annotation database system to support the development and update of enriched BioCyc databases: development of ad hoc BioCyc DB (AcypiCyc, ArthropodaCyc
Patrice Baa-Puyoulet
,
Augusto Vellozo
,
Jaime Huerta-Cepas
,
Gérard Febvay
,
Federica Calevro
et al.
8. Meeting of the International Aphid Genomics Consortium , Jan 2013, Harpenden, United Kingdom
Conference poster
hal-03506707v1
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The CycADS annotation database system to support the development and update of enriched BioCyc databases. Development of ad hoc BioCyc DB : AcypiCyc, ArthopodaCyc
Patrice Baa-Puyoulet
,
Augusto F. Vellozo
,
Jaime Huerta-Cepas
,
Gérard Febvay
,
Toni Gabaldon
et al.
13. Journées Ouvertes en Biologie, Informatique et Mathématiques , Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jul 2012, Rennes, France. Pagination multiple
Conference papers
hal-02747415v1
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tirant, a newly discovered active endogenous retrovirus in Drosophila simulans.
Abdou Akkouche
,
Rita Rebollo
,
Nelly Burlet
,
Caroline Esnault
,
Sonia Martinez
et al.
Journal articles
hal-00763499v1
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Mod/Resc Parsimony Inference: Theory and application
Igor Nor
,
Danny Hermelin
,
Sylvain Charlat
,
Jan Engelstadter
,
Max Reuter
et al.
Journal articles
hal-00763405v1
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Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells
Abdou Akkouche
,
Thomas Grentzinger
,
Marie Fablet
,
Claudia Armenise
,
Nelly Burlet
et al.
Journal articles
hal-00850319v1
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Spatial modelling of plant diversity from high-throughput environmental dna sequence data
Angelika Studeny
,
Florence Forbes
,
Eric Coissac
,
Alain Viari
,
Celine Mercier
et al.
45èmes Journées de Statistique , Société Française de Statistique, May 2013, Toulouse, France
Conference papers
hal-00933699v1
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
Gustavo Akio Tominaga Sacomoto
,
Vincent Lacroix
,
Marie-France Sagot
Workshop on Algorithms in Bioinformatics (WABI) , Sep 2013, Nice, France
Conference papers
hal-00842982v1
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Reconciliation of metabolites and biochemical reactions for metabolic networks.
Thomas Bernard
,
Alan Bridge
,
Anne Morgat
,
Sébastien Moretti
,
Ioannis Xenarios
et al.
Journal articles
hal-00764412v1
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Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility?
Ken Kraaijeveld
,
Barbara M Reumer
,
Laurence Mouton
,
Natacha Kremer
,
Fabrice Vavre
et al.
Journal articles
hal-00746858v1
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Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Gabrielle Duport
,
Nadia Bendridi
et al.
Sixth International Symposium on Molecular Insect Science , 2011, Amsterdam, Netherlands
Conference papers
hal-00748785v1
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Using cascading Bloom filters to improve the memory usage for de Brujin graphs
Kamil Salikhov
,
Gustavo Sacomoto
,
Gregory Kucherov
Workshop on Algorithms in Bioinformatics , Sep 2013, Sophia Antipolis, France. 13p
Conference papers
hal-00824697v1
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Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks.
Steven M Kelk
,
Brett G Olivier
,
Leen Stougie
,
Frank J Bruggeman
Journal articles
hal-00763439v1
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Brief Announcement: Flooding in Dynamic Graphs with Arbitrary Degree Sequence
Hervé Baumann
,
Pierluigi Crescenzi
,
Pierre Fraigniaud
26th International Symposium on Distributed Computing , 2012, Salvador, Brazil. pp.417-419
Conference papers
hal-00763446v1
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Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.
Marco Galardini
,
Alessio Mengoni
,
Matteo Brilli
,
Francesco Pini
,
Antonella Fioravanti
et al.
Journal articles
hal-00746865v1
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Partial enumeration of solutions traces for the problem of sorting by signed reversals
Christian Baudet
,
Zanoni Dias
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine , Aug 2011, Chicago, United States. pp.505--507,
⟨10.1145/2147805.2147884⟩
Conference papers
hal-00748607v1
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A dynamic programming algorithm for the tree mapping problem
C.E. Ferreira
,
A. S. Freire
,
G. A. Puglia
Electronic Notes in Discrete Mathematics , 2011, pp.147-152
Journal articles
hal-00748779v1
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Initial metabolic reconstruction of Klebsiella pneumoniae Kp13, a multidrug resistant pathogen involved in nosocomial outbreaks in Brazil
P. Ivan
,
Cecilia C. Klein
,
Ludovic Cottret
,
Ana T Vasconcelos
,
Ac Gales
et al.
X-meeting , 2011, Florianópolis, Brazil
Conference papers
hal-00748781v1
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[Big Data in biology].
Alain Viari
Journal articles
hal-00851569v1
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Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila.
Adriana Granzotto
,
Fabrício R Lopes
,
Cristina Vieira
,
Claudia M A Carareto
Journal articles
istex
hal-00850379v1
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Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Milana Frenkel-Morgenstern
,
Vincent Lacroix
,
Iakes Ezkurdia
,
Yishai Levin
,
Alexandra Gabashvili
et al.
Journal articles
hal-00744761v1
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The sex-specific impact of meiotic recombination on nucleotide composition.
Alexandra Popa
,
Paul Samollow
,
Christian Gautier
,
Dominique Mouchiroud
Journal articles
hal-00851234v1
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PhEVER: a database for the global exploration of virus-host evolutionary relationships.
Leonor Palmeira
,
Simon Penel
,
Vincent Lotteau
,
Chantal Rabourdin-Combe
,
Christian Gautier
et al.
Journal articles
hal-00562509v1
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Analysis of RNA Transcripts by High-Throughput RNA Sequencing
Paolo Ribeca
,
Vincent Lacroix
,
Michael Sammeth
,
Roderic Guigó
Stefan Stamm, Christopher W. J. Smith, Reinhard Lührmann.
Alternative pre-mRNA Splicing: Theory and Protocols , Wiley-VCH Verlag GmbH & Co. KGaA, 2012, 9783527636778.
⟨10.1002/9783527636778.ch50⟩
Book sections
hal-00850866v1
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