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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise et al.
Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩
Journal articles hal-00647725v1
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Efficient algorithms for the identification of miRNA motifs in DNA sequences

Nuno D Mendes
Bioinformatics [q-bio.QM]. UNIVERSIDADE TECNICA DE LISBOA INSTITUTO SUPERIOR TECNICO, 2011. English. ⟨NNT : ⟩
Theses tel-00750693v1
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Diversity and dynamics of Wolbachia-host associations in arthropods from the Society archipelago, French Polynesia

Patrícia Martins Simões
Biodiversité. Université Claude Bernard - Lyon I, 2012. Français. ⟨NNT : ⟩
Theses tel-00850707v1
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Sampling solution traces for the problem of sorting permutations by signed reversals

Christian Baudet , Zanoni Dias , Marie-France Sagot
Algorithms for Molecular Biology, 2012, 7 (1), pp.18. ⟨10.1186/1748-7188-7-18⟩
Journal articles hal-00784400v1
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Motif representation and discovery

A.M. Carvalho
Bioinformatics [q-bio.QM]. Universidade técnica de Lisboa Instituto superior técnico, 2011. English. ⟨NNT : ⟩
Theses tel-00755042v1
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Identification of metabolic network models from incomplete high-throughput datasets

Sara Berthoumieux , Matteo Brilli , Hidde De Jong , Daniel Kahn , Eugenio Cinquemani et al.
Bioinformatics, 2011, 27 (13), pp.i186-i195. ⟨10.1093/bioinformatics/btr225⟩
Journal articles hal-00793039v1
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A snapshot of histone modifications within transposable elements in Drosophila wild type strains.

Rita Rebollo , Béatrice Horard , Flora Begeot , Marion Delattre , Eric Gilson et al.
PLoS ONE, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩
Journal articles hal-00850321v1
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Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses

Cecilia C Klein , João M P Alves , Myrna G Serrano , Gregory A Buck , Ana Tereza R Vasconcelos et al.
PLoS ONE, 2013, 8 (11), pp.e79786. ⟨10.1371/journal.pone.0079786⟩
Journal articles hal-00922587v1
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Etude structurelle des réseaux : modèles aléatoires, motifs et cycles.

Etienne Birmele
Bio-informatique [q-bio.QM]. Université d'Evry-Val d'Essonne, 2011
Habilitation à diriger des recherches tel-00750375v1
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Absence of a core metabolic network common to symbiotic bacteria

Cecilia Coimbra Klein , Ludovic Cottret , Hubert Charles , Christian Gautier , Ana Tereza Ribeiro de Vasconcelos et al.
6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives
Conference papers hal-02806316v1
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Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Patrice Baa-Puyoulet et al.
BMC Genomics, 2013, 14 (1), pp.235. ⟨10.1186/1471-2164-14-235⟩
Journal articles hal-00824527v1
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AphidAtlas : avancées récentes

Anthony Bretaudeau , Olivier Dameron , Fabrice Legeai , Yvan Rahbé
BAPOA 2013 MOP, Oct 2013, Montpellier, France
Conference papers hal-00913155v1
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Influence of Wolbachia on host gene expression in an obligatory symbiosis.

Natacha Kremer , Delphine Charif , Hélène Henri , Frédérick F. Gavory , Patrick Wincker et al.
BMC Microbiology, 2012, 12 (Suppl 1), pp.1-16. ⟨10.1186/1471-2180-12-S1-S7⟩
Journal articles hal-00763438v1
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Lateral gene transfer as a support for the tree of life.

Sophie S Abby , Eric Tannier , Manolo Gouy , Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (13), pp.4962-4967. ⟨10.1073/pnas.1116871109⟩
Journal articles hal-00752055v1
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The evolution of recombination and genomic structures: a modeling approach.

Alexandra Popa
Bioinformatics [q-bio.QM]. Université Claude Bernard - Lyon I, 2011. English. ⟨NNT : ⟩
Theses tel-00750370v1
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Expression et évolution du phénotype étendu dans une association parasitoïde-virus

Julien Martinez
Sciences agricoles. Université Claude Bernard - Lyon I, 2011. Français. ⟨NNT : 2011LYO10329⟩
Theses tel-00751985v1
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Exploration of the core metabolism of symbiotic bacteria

Cecilia Coimbra Klein , Ludovic Cottret , Janice Kielbassa , Hubert Charles , Christian Gautier et al.
BMC Genomics, 2012, 13 (1), pp.438. ⟨10.1186/1471-2164-13-438⟩
Journal articles hal-00784396v1
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A genomic reappraisal of symbiotic function in the aphid/buchnera symbiosis: reduced transporter sets and variable membrane organisations.

Hubert Charles , Severine Balmand , Araceli Lamelas , Ludovic Cottret , Vicente Pérez-Brocal et al.
PLoS ONE, 2011, 6 (12), pp.e29096. ⟨10.1371/journal.pone.0029096⟩
Journal articles hal-00659506v1
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Expression and Biological Activity of the Cystine Knot Bioinsecticide PA1b (Pea Albumin 1 Subunit b).

Vanessa Eyraud , Lamis Karaki , Isabelle Rahioui , Catherine Sivignon , Pedro da Silva et al.
PLoS ONE, 2013, 8 (12), pp.e81619. ⟨10.1371/journal.pone.0081619⟩
Journal articles hal-00921788v1
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Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia

Veasna Duong , Cameron Simmons , Laurent Gavotte , Alain Viari , Sivuth Ong et al.
Infection, Genetics and Evolution, 2011, N/A (N/A), pp.N/A. ⟨10.1016/j.meegid.2011.06.019⟩
Journal articles pasteur-00805484v1
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Bacterial syntenies: an exact approach with gene quorum.

Yves-Pol Deniélou , Marie-France Sagot , Frédéric Boyer , Alain Viari
BMC Bioinformatics, 2011, 12, pp.193. ⟨10.1186/1471-2105-12-193⟩
Journal articles hal-00746864v1
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Aphid Resistance in Florist's Chrysanthemum (Chrysanthemum morifolium Ramat.) Induced by Sea Anemone Equistatin Overexpression

Mahmood Valizadeh , C. Deraison , S.K. Kazemitabar , Yvan Rahbé , Maarten A Jongsma et al.
African Journal of Biotechnology, 2013, 12 (50), pp.12(50):6922-6930. ⟨10.5897/AJB2013.12956⟩
Journal articles hal-00919389v1
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Endosymbiont diversity among sibling weevil species competing for the same resource

Adrien Merville , Samuel Venner , Hélène Henri , Agnès Vallier , Frédéric Menu et al.
BMC Evolutionary Biology, 2013, 13, pp.28. ⟨10.1186/1471-2148-13-28⟩
Journal articles hal-00850306v1
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Bioinformatic study of the metabolic dialog between a non-pathogenic trypanosomatid and its endosymbiont with evolutionary and functional goals

Cecilia Coimbra Klein
Quantitative Methods [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. English. ⟨NNT : 2013LYO10208⟩
Theses tel-01050338v1
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Short and long-term genome stability analysis of prokaryotic genomes

Matteo Brilli , Pietro Liò , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2013, 14 (1), pp.309. ⟨10.1186/1471-2164-14-309⟩
Journal articles hal-00834426v1
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Identification of metabolic network models from incomplete high-throughput datasets

Sara Berthoumieux , Matteo Brilli , Hidde de Jong , Kahn Daniel , Eugenio Cinquemani et al.
[Research Report] RR-7524, INRIA. 2011
Reports inria-00561999v1
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What genomes have to say about the evolution of the Earth

Bastien Boussau , Manolo Gouy
Gondwana Research, 2012, 21, pp.483-494. ⟨10.1016/j.gr.2011.08.002⟩
Journal articles hal-00698400v1
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Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters

Veasna Duong , Matthew R. Henn , Cameron Simmons , Chantha Ngan , Bunthin Y et al.
Infection, Genetics and Evolution, 2012, pp.N/A. ⟨10.1016/j.meegid.2012.05.012⟩
Journal articles pasteur-00793267v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña , Etienne Birmelé , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan et al.
Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩
Journal articles hal-00764025v1
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Biotype status and resistance to neonicotinoids and carbosulfan in Bemisia tabaci (Hemiptera: Aleyrodidae) in Burkina Faso, West Africa

Olivier Gnankine , Laurence Mouton , Aly Savadogo , Thibaud Martin , Antoine Sanon et al.
International Journal of Pest Management, 2013, 59 (2), pp.95-102. ⟨10.1080/09670874.2013.771806⟩
Journal articles hal-01916766v1