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Cassis: detection of genomic rearrangement breakpoints.

Christian Baudet , Claire Lemaitre , Zanoni Dias , Christian Gautier , Eric Tannier et al.
Bioinformatics, 2010, 26 (15), pp.1897-8. ⟨10.1093/bioinformatics/btq301⟩
Journal articles hal-00681095v1

Finding Long and Multiple Repeats with Edit Distance

Maria Federico , Pierre Peterlongo , Nadia Pisanti , Marie-France Sagot
The Prague Stringology Conference 2011, Aug 2011, Prague, Czech Republic
Conference papers inria-00608208v1

NGS without a reference genome, comparison and visualisation of non assembled data

Vincent Lacroix
Statistical Methods for Post-Genomic Data (SMPGD), 2011, Paris, France
Conference papers hal-00748787v1

Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola.

A. C. C. Wilson , P. D. Ashton , Federica Calevro , H. Charles , Stefano Colella et al.
Insect Molecular Biology, 2010, 19 Suppl 2 (S2), pp.249-58. ⟨10.1111/j.1365-2583.2009.00942.x⟩
Journal articles hal-00539196v1

Wolbachia detection: an assessment of standard PCR protocols.

P. M. Simões , G. Mialdea , D. Reiss , Marie-France Sagot , S. Charlat et al.
Molecular Ecology Resources, 2011, 11 (3), pp.567-72. ⟨10.1111/j.1755-0998.2010.02955.x⟩
Journal articles istex hal-00746848v1

Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex.

Gwénaelle Gueguen , Fabrice Vavre , Olivier Gnankine , Michel Peterschmitt , Delphine Charif et al.
Molecular Ecology, 2010, 19 (19), pp.4365-4378. ⟨10.1111/j.1365-294X.2010.04775.x⟩
Journal articles istex hal-00746855v1

Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection.

Antoine Branca , Bruno Pierre Le Ru , Fabrice Vavre , Jean-François Silvain , Stéphane Dupas et al.
Molecular Ecology, 2011, 20 (5), pp.959-71. ⟨10.1111/j.1365-294X.2010.04977.x⟩
Journal articles istex hal-00746863v1

Student's Performance and Satisfaction with Web vs. paper-based practice quizzes and lecture notes

Mônica Macedo-Rouet , Muriel Ney , Sandrine Charles , Geneviève Lallich-Boidin
Computers and Education, 2009, 53 (2), pp.375-384. ⟨10.1016/j.compedu.2009.02.013⟩
Journal articles istex hal-00583670v1

Caractérisation transcriptomique du développement embryonnaire et larvaire du puceron du pois Acyrthosiphon pisum

Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Yvan Rahbé et al.
16. Colloque de Biologie de l’Insecte, Oct 2010, Lyon, France. 126 p
Conference papers hal-02755293v1

AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses

Stefano Colella , A. Vellozo , L. Cottret , G. Febvay , Federica Calevro et al.
8th International Symposium on Aphids (8 ISA 2009), 2009, Catania (Italie), juin 2009, France. pp.1-1
Conference papers hal-00391280v1

Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.

Marco Galardini , Alessio Mengoni , Matteo Brilli , Francesco Pini , Antonella Fioravanti et al.
BMC Genomics, 2011, 12, pp.235. ⟨10.1186/1471-2164-12-235⟩
Journal articles hal-00746865v1

The transmission efficiency of tomato yellow leaf curl virus by the whitefly Bemisia tabaci is correlated with the presence of a specific symbiotic bacterium species.

Yuval Gottlieb , Einat Zchori-Fein , Netta Mozes-Daube , Svetlana Kontsedalov , Marisa Skaljac et al.
Journal of Virology, 2010, 84 (18), pp.9310-7. ⟨10.1128/JVI.00423-10⟩
Journal articles hal-00746851v1

Annotation et évolution des familles de transporteurs chez le puceron du pois Acyrthosiphon pisum

N. Parisot
Bio-informatique [q-bio.QM]. 2010
Master thesis hal-00784737v1

Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila.

Adriana Granzotto , Fabrício R Lopes , Cristina Vieira , Claudia M A Carareto
Molecular Genetics and Genomics, 2011, 286 (1), pp.57-66. ⟨10.1007/s00438-011-0629-9⟩
Journal articles istex hal-00850379v1

A dynamic programming algorithm for the tree mapping problem

C.E. Ferreira , A. S. Freire , G. A. Puglia
Electronic Notes in Discrete Mathematics, 2011, pp.147-152
Journal articles hal-00748779v1

Initial metabolic reconstruction of Klebsiella pneumoniae Kp13, a multidrug resistant pathogen involved in nosocomial outbreaks in Brazil

P. Ivan , Cecilia C. Klein , Ludovic Cottret , Ana T Vasconcelos , Ac Gales et al.
X-meeting, 2011, Florianópolis, Brazil
Conference papers hal-00748781v1

An improved algorithm to enumerate all traces that sort a signed permutation by reversals

Christian Baudet , Zanoni Dias
ACM Symposium on Applied Computing (SAC), Mar 2010, Sierre, Switzerland. pp.1521-1525, ⟨10.1145/1774088.1774416⟩
Conference papers hal-00748579v1

Partial enumeration of solutions traces for the problem of sorting by signed reversals

Christian Baudet , Zanoni Dias
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine, Aug 2011, Chicago, United States. pp.505--507, ⟨10.1145/2147805.2147884⟩
Conference papers hal-00748607v1

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Marie Fablet , Emmanuelle Lerat , Rita Rebollo , Béatrice Horard , Nelly Burlet et al.
FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩
Journal articles hal-00850396v1

CycADS: an annotation management system for the development and update of BioCyc metabolic network databases

A. Vellozo , Patrice Baa-Puyoulet , A. Veron , Jaime Huerta-Cepas , Ludovic Cottret et al.
1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France
Conference papers hal-00496032v1

Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility?

Ken Kraaijeveld , Barbara M Reumer , Laurence Mouton , Natacha Kremer , Fabrice Vavre et al.
The Science of Nature Naturwissenschaften, 2011, 98 (3), pp.175-80. ⟨10.1007/s00114-010-0756-x⟩
Journal articles hal-00746858v1

Intragenomic conflict in populations infected by Parthenogenesis Inducing Wolbachia ends with irreversible loss of sexual reproduction.

Richard Stouthamer , James E Russell , Fabrice Vavre , Leonard Nunney
BMC Evolutionary Biology, 2010, 10, pp.229. ⟨10.1186/1471-2148-10-229⟩
Journal articles hal-00850399v1

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.

Lilia Brinza , José Viñuelas , Ludovic Cottret , Federica Calevro , Yvan Rahbé et al.
Comptes Rendus Biologies, 2009, 332 (11), pp.1034-49. ⟨10.1016/j.crvi.2009.09.007⟩
Journal articles istex hal-00445861v1

Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development

Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Nadia Bendridi et al.
Sixth International Symposium on Molecular Insect Science, 2011, Amsterdam, Netherlands
Conference papers hal-00748785v1

Exploration et inférence du réseau de régulation de la transcription de la bactérie symbiotique intracellulaire à génome réduit, Buchnera aphidicola

Lilia Brinza
Microbiologie et Parasitologie. Institut National des Sciences Appliquées de Lyon, 2010. Français. ⟨NNT : ⟩
Theses tel-02820284v1

The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism

Stefano Colella , A. Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro et al.
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009, Jun 2009, France
Conference papers hal-00498411v1

PhEVER: a database for the global exploration of virus-host evolutionary relationships.

Leonor Palmeira , Simon Penel , Vincent Lotteau , Chantal Rabourdin-Combe , Christian Gautier et al.
Nucleic Acids Research, 2011, 39 (Database issue), pp.D569-75. ⟨10.1093/nar/gkq1013⟩
Journal articles hal-00562509v1

Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable

Hubert Charles , Severine Balmand , Araceli Lamelas , Ludovic Cottret , Vicente Pérez-Brocal et al.
4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France
Conference papers hal-02808863v1

Transcriptome analysis of embryo development in a parthenogenetic and symbiotic insect model, the pea aphid

Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Yvan Rahbé et al.
IPG'10 Integrative Post-Genomics, Centre Jacques Cartier. Lyon, FRA., Nov 2011, Lyon, France
Conference papers hal-02814211v1

RNA-seq without a reference genome: a comparison of the mapping and the assembly approaches

M.-C. Carpentier , J. Charif , Vincent Lacroix , Marie-France Sagot , Fabrice Vavre et al.
JOBIM, 2011, Paris, France
Conference papers hal-00748612v1