Cassis: detection of genomic rearrangement breakpoints.
Christian Baudet
,
Claire Lemaitre
,
Zanoni Dias
,
Christian Gautier
,
Eric Tannier
et al.
Journal articles
hal-00681095v1
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Finding Long and Multiple Repeats with Edit Distance
Maria Federico
,
Pierre Peterlongo
,
Nadia Pisanti
,
Marie-France Sagot
The Prague Stringology Conference 2011 , Aug 2011, Prague, Czech Republic
Conference papers
inria-00608208v1
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NGS without a reference genome, comparison and visualisation of non assembled data
Vincent Lacroix
Statistical Methods for Post-Genomic Data (SMPGD) , 2011, Paris, France
Conference papers
hal-00748787v1
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Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola.
A. C. C. Wilson
,
P. D. Ashton
,
Federica Calevro
,
H. Charles
,
Stefano Colella
et al.
Journal articles
hal-00539196v1
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Wolbachia detection: an assessment of standard PCR protocols.
P. M. Simões
,
G. Mialdea
,
D. Reiss
,
Marie-France Sagot
,
S. Charlat
et al.
Journal articles
istex
hal-00746848v1
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Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex.
Gwénaelle Gueguen
,
Fabrice Vavre
,
Olivier Gnankine
,
Michel Peterschmitt
,
Delphine Charif
et al.
Journal articles
istex
hal-00746855v1
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Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection.
Antoine Branca
,
Bruno Pierre Le Ru
,
Fabrice Vavre
,
Jean-François Silvain
,
Stéphane Dupas
et al.
Journal articles
istex
hal-00746863v1
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Student's Performance and Satisfaction with Web vs. paper-based practice quizzes and lecture notes
Mônica Macedo-Rouet
,
Muriel Ney
,
Sandrine Charles
,
Geneviève Lallich-Boidin
Journal articles
istex
hal-00583670v1
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Caractérisation transcriptomique du développement embryonnaire et larvaire du puceron du pois Acyrthosiphon pisum
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Marie-Gabrielle Duport
,
Yvan Rahbé
et al.
16. Colloque de Biologie de l’Insecte , Oct 2010, Lyon, France. 126 p
Conference papers
hal-02755293v1
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AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses
Stefano Colella
,
A. Vellozo
,
L. Cottret
,
G. Febvay
,
Federica Calevro
et al.
8th International Symposium on Aphids (8 ISA 2009) , 2009, Catania (Italie), juin 2009, France. pp.1-1
Conference papers
hal-00391280v1
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Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.
Marco Galardini
,
Alessio Mengoni
,
Matteo Brilli
,
Francesco Pini
,
Antonella Fioravanti
et al.
Journal articles
hal-00746865v1
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The transmission efficiency of tomato yellow leaf curl virus by the whitefly Bemisia tabaci is correlated with the presence of a specific symbiotic bacterium species.
Yuval Gottlieb
,
Einat Zchori-Fein
,
Netta Mozes-Daube
,
Svetlana Kontsedalov
,
Marisa Skaljac
et al.
Journal articles
hal-00746851v1
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Annotation et évolution des familles de transporteurs chez le puceron du pois Acyrthosiphon pisum
N. Parisot
Bio-informatique [q-bio.QM]. 2010
Master thesis
hal-00784737v1
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Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila.
Adriana Granzotto
,
Fabrício R Lopes
,
Cristina Vieira
,
Claudia M A Carareto
Journal articles
istex
hal-00850379v1
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A dynamic programming algorithm for the tree mapping problem
C.E. Ferreira
,
A. S. Freire
,
G. A. Puglia
Electronic Notes in Discrete Mathematics , 2011, pp.147-152
Journal articles
hal-00748779v1
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Initial metabolic reconstruction of Klebsiella pneumoniae Kp13, a multidrug resistant pathogen involved in nosocomial outbreaks in Brazil
P. Ivan
,
Cecilia C. Klein
,
Ludovic Cottret
,
Ana T Vasconcelos
,
Ac Gales
et al.
X-meeting , 2011, Florianópolis, Brazil
Conference papers
hal-00748781v1
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An improved algorithm to enumerate all traces that sort a signed permutation by reversals
Christian Baudet
,
Zanoni Dias
Conference papers
hal-00748579v1
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Partial enumeration of solutions traces for the problem of sorting by signed reversals
Christian Baudet
,
Zanoni Dias
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine , Aug 2011, Chicago, United States. pp.505--507,
⟨10.1145/2147805.2147884⟩
Conference papers
hal-00748607v1
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Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.
Marie Fablet
,
Emmanuelle Lerat
,
Rita Rebollo
,
Béatrice Horard
,
Nelly Burlet
et al.
Journal articles
hal-00850396v1
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CycADS: an annotation management system for the development and update of BioCyc metabolic network databases
A. Vellozo
,
Patrice Baa-Puyoulet
,
A. Veron
,
Jaime Huerta-Cepas
,
Ludovic Cottret
et al.
1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE , 2009, France
Conference papers
hal-00496032v1
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Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility?
Ken Kraaijeveld
,
Barbara M Reumer
,
Laurence Mouton
,
Natacha Kremer
,
Fabrice Vavre
et al.
Journal articles
hal-00746858v1
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Intragenomic conflict in populations infected by Parthenogenesis Inducing Wolbachia ends with irreversible loss of sexual reproduction.
Richard Stouthamer
,
James E Russell
,
Fabrice Vavre
,
Leonard Nunney
Journal articles
hal-00850399v1
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Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.
Lilia Brinza
,
José Viñuelas
,
Ludovic Cottret
,
Federica Calevro
,
Yvan Rahbé
et al.
Journal articles
istex
hal-00445861v1
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Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Gabrielle Duport
,
Nadia Bendridi
et al.
Sixth International Symposium on Molecular Insect Science , 2011, Amsterdam, Netherlands
Conference papers
hal-00748785v1
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Exploration et inférence du réseau de régulation de la transcription de la bactérie symbiotique intracellulaire à génome réduit, Buchnera aphidicola
Lilia Brinza
Microbiologie et Parasitologie. Institut National des Sciences Appliquées de Lyon, 2010. Français.
⟨NNT : ⟩
Theses
tel-02820284v1
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The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism
Stefano Colella
,
A. Vellozo
,
Ludovic Cottret
,
Gérard Febvay
,
Federica Calevro
et al.
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009 , Jun 2009, France
Conference papers
hal-00498411v1
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PhEVER: a database for the global exploration of virus-host evolutionary relationships.
Leonor Palmeira
,
Simon Penel
,
Vincent Lotteau
,
Chantal Rabourdin-Combe
,
Christian Gautier
et al.
Journal articles
hal-00562509v1
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Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable
Hubert Charles
,
Severine Balmand
,
Araceli Lamelas
,
Ludovic Cottret
,
Vicente Pérez-Brocal
et al.
4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés , Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France
Conference papers
hal-02808863v1
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Transcriptome analysis of embryo development in a parthenogenetic and symbiotic insect model, the pea aphid
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Marie-Gabrielle Duport
,
Yvan Rahbé
et al.
IPG'10 Integrative Post-Genomics , Centre Jacques Cartier. Lyon, FRA., Nov 2011, Lyon, France
Conference papers
hal-02814211v1
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RNA-seq without a reference genome: a comparison of the mapping and the assembly approaches
M.-C. Carpentier
,
J. Charif
,
Vincent Lacroix
,
Marie-France Sagot
,
Fabrice Vavre
et al.
JOBIM , 2011, Paris, France
Conference papers
hal-00748612v1
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