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Motif representation and discovery
A.M. Carvalho
Bioinformatics [q-bio.QM]. Universidade técnica de Lisboa Instituto superior técnico, 2011. English. ⟨NNT : ⟩
Theses
tel-00755042v1
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Identification of metabolic network models from incomplete high-throughput datasets
Sara Berthoumieux
,
Matteo Brilli
,
Hidde De Jong
,
Daniel Kahn
,
Eugenio Cinquemani
et al.
Journal articles
hal-00793039v1
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Etude structurelle des réseaux : modèles aléatoires, motifs et cycles.
Etienne Birmele
Bio-informatique [q-bio.QM]. Université d'Evry-Val d'Essonne, 2011
Habilitation à diriger des recherches
tel-00750375v1
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Absence of a core metabolic network common to symbiotic bacteria
Cecilia Coimbra Klein
,
Ludovic Cottret
,
Hubert Charles
,
Christian Gautier
,
Ana Tereza Ribeiro de Vasconcelos
et al.
6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives
Conference papers
hal-02806316v1
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Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia
Veasna Duong
,
Cameron Simmons
,
Laurent Gavotte
,
Alain Viari
,
Sivuth Ong
et al.
Journal articles
pasteur-00805484v1
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Expression et évolution du phénotype étendu dans une association parasitoïde-virus
Julien Martinez
Theses
tel-00751985v1
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The evolution of recombination and genomic structures: a modeling approach.
Alexandra Popa
Bioinformatics [q-bio.QM]. Université Claude Bernard - Lyon I, 2011. English. ⟨NNT : ⟩
Theses
tel-00750370v1
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A genomic reappraisal of symbiotic function in the aphid/buchnera symbiosis: reduced transporter sets and variable membrane organisations.
Hubert Charles
,
Severine Balmand
,
Araceli Lamelas
,
Ludovic Cottret
,
Vicente Pérez-Brocal
et al.
Journal articles
hal-00659506v1
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Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS.
Lilia Brinza
,
Federica Calevro
,
Gabrielle Duport
,
Karen Gaget
,
Christian Gautier
et al.
Journal articles
hal-00632959v1
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Multichromosomal median and halving problems under different genomic distances
Eric Tannier
,
Chunfang Zheng
,
David Sankoff
Journal articles
hal-00784456v1
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Lossless filter for multiple repeats with bounded edit distance
Pierre Peterlongo
,
Gustavo Akio Tominaga Sacomoto
,
Alair Pereira Do Lago
,
Nadia Pisanti
,
Marie-France Sagot
et al.
Journal articles
hal-00784457v1
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Characterization of partenogenetic embryo development in the context of symbiosis using transcriptome analysis in the pea aphid model
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Marie-Gabrielle Duport
,
Yvan Rahbé
et al.
EMBO Workshop on Systems Biology of Development, EMBO. Heidelberg, DEU., Aug 2010, Ascona, Switzerland. 1 p
Conference papers
hal-01231279v1
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Exploration et inférence du réseau de régulation de la transcription de la bactérie symbiotique intracellulaire à génome réduit Buchnera aphidicola
Lilia Brinza
Bio-informatique [q-bio.QM]. INSA de Lyon, 2010. Français. ⟨NNT : ⟩
Theses
tel-00750363v1
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Efficient algorithms for the identification of miRNA motifs in DNA sequences
Nuno D Mendes
Bioinformatics [q-bio.QM]. UNIVERSIDADE TECNICA DE LISBOA INSTITUTO SUPERIOR TECNICO, 2011. English. ⟨NNT : ⟩
Theses
tel-00750693v1
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms
Paulo Vieira Milreu
,
Vicente Acuña
,
Etienne E. Birmelé
,
Pierluigi Crescenzi
,
Alberto Marchetti-Spaccamela
et al.
Conference papers
hal-00751339v1
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A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources
Fabrice Legeai
,
Stefano Colella
,
Jaime Huerta-Cepas
,
Jean-Pierre Gauthier
,
Augusto Vellozo
et al.
10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010
Conference poster
hal-01231276v1
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Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays
Cyril Dégletagne
,
Céline Keime
,
Benjamin Rey
,
Marc de Dinechin
,
Fabien Forcheron
et al.
Journal articles
hal-00851240v1
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Bacterial syntenies: an exact approach with gene quorum.
Yves-Pol Deniélou
,
Marie-France Sagot
,
Frédéric Boyer
,
Alain Viari
Journal articles
hal-00746864v1
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Identification of metabolic network models from incomplete high-throughput datasets
Sara Berthoumieux
,
Matteo Brilli
,
Hidde de Jong
,
Kahn Daniel
,
Eugenio Cinquemani
et al.
[Research Report] RR-7524, INRIA. 2011
Reports
inria-00561999v1
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Genome Sequence of the Pea Aphid Acyrthosiphon pisum
Iagc The International Aphid Genomics Consortium
,
Federica Calevro
,
Hubert Charles
,
Stefano Colella
,
Gérard Febvay
et al.
Journal articles
hal-00459970v1
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Models and algorithms for metabolic networks: elementary modes and precursor sets
Vicente Acuña
Algorithme et structure de données [cs.DS]. Université Claude Bernard - Lyon I, 2010. Français. ⟨NNT : ⟩
Theses
tel-00850705v1
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The auxin signalling network translates dynamic input into robust patterning at the shoot apex
Teva Vernoux
,
Géraldine Brunoud
,
Etienne Farcot
,
Valérie Morin
,
Hilde van Den Daele
et al.
Journal articles
hal-00828880v1
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Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
Amélie Véron
,
Claire Lemaitre
,
Christian Gautier
,
Vincent Lacroix
,
Marie-France Sagot
et al.
Journal articles
hal-00784423v1
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Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi
Nuno Mendes
,
Ana Freitas
,
Ana Vasconcelos
,
Marie-France Sagot
Journal articles
hal-00784432v1
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MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks.
Ludovic Cottret
,
David Wildridge
,
Florence Vinson
,
Michael P Barrett
,
Hubert Charles
et al.
Journal articles
hal-00690651v1
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Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata.
Ludovic Cottret
,
Paulo Vieira Milreu
,
Vicente Acuña
,
Alberto Marchetti-Spaccamela
,
Leen Stougie
et al.
Journal articles
hal-00690650v1
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kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq
Gustavo Akio Tominaga Sacomoto
,
J. Kielbassa
,
Pavlos Antoniou
,
Rayan Chikhi
,
Raluca Uricaru
et al.
[Research Report] RR-7852, INRIA. 2011, pp.12
Reports
hal-00654249v2
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Global analysis of DNA methylation and transcription of human repetitive sequences.
Béatrice Horard
,
Angéline Eymery
,
Geneviève Fourel
,
Nikita Vassetzky
,
Jacques Puechberty
et al.
Journal articles
hal-00851248v1
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Overexpression of transcription factor Sp1 leads to gene expression perturbations and cell cycle inhibition.
Emmanuelle Deniaud
,
Joël Baguet
,
Roxane Chalard
,
Bariza Blanquier
,
Lilia Brinza
et al.
Journal articles
hal-00851247v1
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CycADS: an annotation database system to ease the development and update of BioCyc databases.
Augusto F Vellozo
,
Amélie S Véron
,
Patrice Baa-Puyoulet
,
Jaime Huerta-Cepas
,
Ludovic Cottret
et al.
Journal articles
hal-00632965v1
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