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Cassis: detection of genomic rearrangement breakpoints.

Christian Baudet , Claire Lemaitre , Zanoni Dias , Christian Gautier , Eric Tannier et al.
Bioinformatics, 2010, 26 (15), pp.1897-8. ⟨10.1093/bioinformatics/btq301⟩
Journal articles hal-00681095v1

An introduction to metabolic networks and their structural analysis.

Vincent Lacroix , Ludovic Cottret , Patricia Thebault , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Journal articles hal-00355497v1
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Bacterial syntenies: an exact approach with gene quorum.

Yves-Pol Deniélou , Marie-France Sagot , Frédéric Boyer , Alain Viari
BMC Bioinformatics, 2011, 12, pp.193. ⟨10.1186/1471-2105-12-193⟩
Journal articles hal-00746864v1

Structural and dynamical analysis of biological networks.

Cecilia C. Klein , Andrea Marino , Marie-France Sagot , Paulo Vieira Milreu , Matteo Brilli et al.
Briefings in Functional Genomics and Proteomics, 2012, 14, pp.309. ⟨10.1093/bfgp/els030⟩
Journal articles hal-00737455v1
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Aphid Resistance in Florist's Chrysanthemum (Chrysanthemum morifolium Ramat.) Induced by Sea Anemone Equistatin Overexpression

Mahmood Valizadeh , C. Deraison , S.K. Kazemitabar , Yvan Rahbé , Maarten A Jongsma et al.
African Journal of Biotechnology, 2013, 12 (50), pp.12(50):6922-6930. ⟨10.5897/AJB2013.12956⟩
Journal articles hal-00919389v1

Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola.

A. C. C. Wilson , P. D. Ashton , Federica Calevro , H. Charles , Stefano Colella et al.
Insect Molecular Biology, 2010, 19 Suppl 2 (S2), pp.249-58. ⟨10.1111/j.1365-2583.2009.00942.x⟩
Journal articles hal-00539196v1
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Endosymbiont diversity among sibling weevil species competing for the same resource

Adrien Merville , Samuel Venner , Hélène Henri , Agnès Vallier , Frédéric Menu et al.
BMC Evolutionary Biology, 2013, 13, pp.28. ⟨10.1186/1471-2148-13-28⟩
Journal articles hal-00850306v1

Transposon proliferation in an asexual parasitoid.

Ken Kraaijeveld , Brechtje Zwanenburg , Benjamin Hubert , Cristina Vieira , Sylvia de Pater et al.
Molecular Ecology, 2012, 21 (16), pp.3898-3906. ⟨10.1111/j.1365-294X.2012.5582.x⟩
Journal articles istex hal-00850325v1
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Bioinformatic study of the metabolic dialog between a non-pathogenic trypanosomatid and its endosymbiont with evolutionary and functional goals

Cecilia Coimbra Klein
Quantitative Methods [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. English. ⟨NNT : 2013LYO10208⟩
Theses tel-01050338v1
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Short and long-term genome stability analysis of prokaryotic genomes

Matteo Brilli , Pietro Liò , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2013, 14 (1), pp.309. ⟨10.1186/1471-2164-14-309⟩
Journal articles hal-00834426v1
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Identification of metabolic network models from incomplete high-throughput datasets

Sara Berthoumieux , Matteo Brilli , Hidde de Jong , Kahn Daniel , Eugenio Cinquemani et al.
[Research Report] RR-7524, INRIA. 2011
Reports inria-00561999v1

Wolbachia detection: an assessment of standard PCR protocols.

P. M. Simões , G. Mialdea , D. Reiss , Marie-France Sagot , S. Charlat et al.
Molecular Ecology Resources, 2011, 11 (3), pp.567-72. ⟨10.1111/j.1755-0998.2010.02955.x⟩
Journal articles istex hal-00746848v1

Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection.

Antoine Branca , Bruno Pierre Le Ru , Fabrice Vavre , Jean-François Silvain , Stéphane Dupas et al.
Molecular Ecology, 2011, 20 (5), pp.959-71. ⟨10.1111/j.1365-294X.2010.04977.x⟩
Journal articles istex hal-00746863v1

Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex.

Gwénaelle Gueguen , Fabrice Vavre , Olivier Gnankine , Michel Peterschmitt , Delphine Charif et al.
Molecular Ecology, 2010, 19 (19), pp.4365-4378. ⟨10.1111/j.1365-294X.2010.04775.x⟩
Journal articles istex hal-00746855v1
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What genomes have to say about the evolution of the Earth

Bastien Boussau , Manolo Gouy
Gondwana Research, 2012, 21, pp.483-494. ⟨10.1016/⟩
Journal articles hal-00698400v1

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

Baptiste Saudemont , Alexandra Popa , Joanna Parmley , Vincent Rocher , Corinne Blugeon et al.
Genome Biology, 2017, 18 (1), ⟨10.1186/s13059-017-1344-6⟩
Journal articles hal-02321589v1
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Signs of Neutralization in a Redundant Gene Involved in Homologous Recombination in Wolbachia Endosymbionts

Myriam Badawi , Isabelle Giraud , Fabrice Vavre , Pierre Grève , Richard Cordaux et al.
Genome Biology and Evolution, 2014, 10 (6), pp.2654-2664. ⟨10.1093/gbe/evu207⟩
Journal articles hal-01091858v1
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Manipulation of arthropod sex determination by endosymbionts: diversity and molecular mechanisms

Wen-Juan Ma , Fabrice Vavre , Leo W. Beukeboom
Sexual Development, 2014, pp.59-73
Journal articles hal-01092616v1

Finding Long and Multiple Repeats with Edit Distance

Maria Federico , Pierre Peterlongo , Nadia Pisanti , Marie-France Sagot
The Prague Stringology Conference 2011, Aug 2011, Prague, Czech Republic
Conference papers inria-00608208v1
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Genome Sequence of the Pea Aphid Acyrthosiphon pisum

Iagc The International Aphid Genomics Consortium , Federica Calevro , Hubert Charles , Stefano Colella , Gérard Febvay et al.
PLoS Biology, 2010, 8 (2), pp.e1000313. ⟨10.1371/journal.pbio.1000313⟩
Journal articles hal-00459970v1
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Complex dynamic of dengue virus serotypes 2 and 3 in Cambodia following series of climate disasters

Veasna Duong , Matthew R. Henn , Cameron Simmons , Chantha Ngan , Bunthin Y et al.
Infection, Genetics and Evolution, 2012, pp.N/A. ⟨10.1016/j.meegid.2012.05.012⟩
Journal articles pasteur-00793267v1
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Rime: Repeat identification

Maria Federico , Pierre Peterlongo , Nadia Pisanti , Marie-France Sagot
Discrete Applied Mathematics, 2014, 163 (3), pp.275-286. ⟨10.1016/j.dam.2013.02.016⟩
Journal articles hal-00802023v1

Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells

Abdou Akkouche , Thomas Grentzinger , Marie Fablet , Claudia Armenise , Nelly Burlet et al.
EMBO Reports, 2013, 14 (5), pp.458-64. ⟨10.1038/embor.2013.38⟩
Journal articles hal-00850319v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña , Etienne Birmelé , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan et al.
Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩
Journal articles hal-00764025v1
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Biotype status and resistance to neonicotinoids and carbosulfan in Bemisia tabaci (Hemiptera: Aleyrodidae) in Burkina Faso, West Africa

Olivier Gnankine , Laurence Mouton , Aly Savadogo , Thibaud Martin , Antoine Sanon et al.
International Journal of Pest Management, 2013, 59 (2), pp.95-102. ⟨10.1080/09670874.2013.771806⟩
Journal articles hal-01916766v1

NGS without a reference genome, comparison and visualisation of non assembled data

Vincent Lacroix
Statistical Methods for Post-Genomic Data (SMPGD), 2011, Paris, France
Conference papers hal-00748787v1
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Models and algorithms for metabolic networks: elementary modes and precursor sets

Vicente Acuña
Algorithme et structure de données [cs.DS]. Université Claude Bernard - Lyon I, 2010. Français. ⟨NNT : ⟩
Theses tel-00850705v1
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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali , Julien Lagarde , Philipp Kapranov , Vincent Lacroix , Christelle Borel et al.
PLoS ONE, 2012, 7, pp.1-22
Journal articles hal-00698428v1

Characterizing isomiR variants within the micro RNA ‐34/449 family

Olivier Mercey , Alexandra Popa , Amelie Cavard , Agnès Paquet , Benoît Chevalier et al.
FEBS Letters, 2017, 591 (5), pp.693-705. ⟨10.1002/1873-3468.12595⟩
Journal articles hal-02531825v1

The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti

Francesco Pini , Benjamin Frage , Lorenzo Ferri , Nicole J. de Nisco , Saswat S. Mohapatra et al.
Molecular Microbiology, 2013, 90 (1), pp.54 - 71. ⟨10.1111/mmi.12347⟩
Journal articles hal-02646296v1