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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña , Etienne Birmelé , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan et al.
Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩
Journal articles hal-00764025v1

Coding with variable block maps

Gilles Didier , Vicente Acuña , Alejandro Maass
Theoretical Computer Science, 2006, 369 (1-3), pp.396 - 405. ⟨10.1016/j.tcs.2006.09.024⟩
Journal articles hal-01614117v1
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms

Paulo Vieira Milreu , Vicente Acuña , Etienne E. Birmelé , Pierluigi Crescenzi , Alberto Marchetti-Spaccamela et al.
Workshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩
Conference papers hal-00751339v1
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Identification of metabolic network models from incomplete high-throughput datasets

Sara Berthoumieux , Matteo Brilli , Hidde De Jong , Daniel Kahn , Eugenio Cinquemani et al.
Bioinformatics, 2011, 27 (13), pp.i186-i195. ⟨10.1093/bioinformatics/btr225⟩
Journal articles hal-00793039v1

Spatial modelling of plant diversity from high-throughput environmental dna sequence data

Angelika Studeny , Florence Forbes , Eric Coissac , Alain Viari , Celine Mercier et al.
45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France
Conference papers hal-00933699v1

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.

Vicente Acuña , Paulo Vieira Milreu , Ludovic Cottret , Alberto Marchetti-Spaccamela , Leen Stougie et al.
Bioinformatics, 2012, 28 (19), pp.2474-2483. ⟨10.1093/bioinformatics/bts423⟩
Journal articles hal-00751715v1
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Minimum ratio cover of matrix columns by extreme rays of its induced cone

Alexandre da Silva Freire , Vicente Acuña , Pierluigi Crescenzi , Carlos Eduardo Ferreira , Vincent Lacroix et al.
Proceedings of the Second international Symposium on Combinatorial Optimization (ISCO), Apr 2012, Athens, Greece. pp.165--177, ⟨10.1007/978-3-642-32147-4_16⟩
Conference papers hal-00763453v1

Assessing the exceptionality of coloured motifs in networks

Sophie S. Schbath , Vincent Lacroix , Marie-France Sagot
EURASIP Journal on Bioinformatics and Systems Biology, 2009, 2009, 9 p. on line. ⟨10.1155/2009/616234⟩
Journal articles hal-02656035v1

The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes

Valentina Baldazzi , Delphine Ropers , Yves Markowicz , Daniel Kahn , Hans Geiselmann et al.
Actes des Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2010), 2010, Montpellier, France. pp.11-12
Conference papers hal-00793021v1