Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks.
Steven M Kelk
,
Brett G Olivier
,
Leen Stougie
,
Frank J Bruggeman
Journal articles
hal-00763439v1
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Brief Announcement: Flooding in Dynamic Graphs with Arbitrary Degree Sequence
Hervé Baumann
,
Pierluigi Crescenzi
,
Pierre Fraigniaud
26th International Symposium on Distributed Computing , 2012, Salvador, Brazil. pp.417-419
Conference papers
hal-00763446v1
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Multichromosomal median and halving problems under different genomic distances
Eric Tannier
,
Chunfang Zheng
,
David Sankoff
Journal articles
hal-00784456v1
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Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.
Milana Frenkel-Morgenstern
,
Vincent Lacroix
,
Iakes Ezkurdia
,
Yishai Levin
,
Alexandra Gabashvili
et al.
Journal articles
hal-00744761v1
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The evolution of recombination and genomic structures: a modeling approach.
Alexandra Popa
Bioinformatics [q-bio.QM]. Université Claude Bernard - Lyon I, 2011. English.
⟨NNT : ⟩
Theses
tel-00750370v1
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Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.
Marco Galardini
,
Alessio Mengoni
,
Matteo Brilli
,
Francesco Pini
,
Antonella Fioravanti
et al.
Journal articles
hal-00746865v1
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Annotation et évolution des familles de transporteurs chez le puceron du pois Acyrthosiphon pisum
N. Parisot
Bio-informatique [q-bio.QM]. 2010
Master thesis
hal-00784737v1
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A Fast Discovery Algorithm for Large Common Connected Induced Subgraphs
Alessio Conte
,
Roberto Grossi
,
Andrea Marino
,
Lorenzo Tattini
,
Luca Versari
et al.
WEPA 2019 - Workshop on Enumeration Problems & Applications , Oct 2019, Awaji Island, Japan. pp.1-26
Conference papers
hal-02338435v1
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AphidAtlas : avancées récentes
Anthony Bretaudeau
,
Olivier Dameron
,
Fabrice Legeai
,
Yvan Rahbé
BAPOA 2013 MOP , Oct 2013, Montpellier, France
Conference papers
hal-00913155v1
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Using cascading Bloom filters to improve the memory usage for de Brujin graphs
Kamil Salikhov
,
Gustavo Sacomoto
,
Gregory Kucherov
Workshop on Algorithms in Bioinformatics , Sep 2013, Sophia Antipolis, France. 13p
Conference papers
hal-00824697v1
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A dynamic programming algorithm for the tree mapping problem
C.E. Ferreira
,
A. S. Freire
,
G. A. Puglia
Electronic Notes in Discrete Mathematics , 2011, pp.147-152
Journal articles
hal-00748779v1
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Initial metabolic reconstruction of Klebsiella pneumoniae Kp13, a multidrug resistant pathogen involved in nosocomial outbreaks in Brazil
P. Ivan
,
Cecilia C. Klein
,
Ludovic Cottret
,
Ana T Vasconcelos
,
Ac Gales
et al.
X-meeting , 2011, Florianópolis, Brazil
Conference papers
hal-00748781v1
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An improved algorithm to enumerate all traces that sort a signed permutation by reversals
Christian Baudet
,
Zanoni Dias
Conference papers
hal-00748579v1
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Partial enumeration of solutions traces for the problem of sorting by signed reversals
Christian Baudet
,
Zanoni Dias
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine , Aug 2011, Chicago, United States. pp.505--507,
⟨10.1145/2147805.2147884⟩
Conference papers
hal-00748607v1
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Motif representation and discovery
A.M. Carvalho
Bioinformatics [q-bio.QM]. Universidade técnica de Lisboa Instituto superior técnico, 2011. English.
⟨NNT : ⟩
Theses
tel-00755042v1
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Metabolic Investigation of the Mycoplasmas from the Swine Respiratory Tract
Mariana Galvao Ferrarini
Theses
tel-01315159v1
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Identification of metabolic network models from incomplete high-throughput datasets
Sara Berthoumieux
,
Matteo Brilli
,
Hidde De Jong
,
Daniel Kahn
,
Eugenio Cinquemani
et al.
Journal articles
hal-00793039v1
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Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses
Cecilia C Klein
,
João M P Alves
,
Myrna G Serrano
,
Gregory A Buck
,
Ana Tereza R Vasconcelos
et al.
Journal articles
hal-00922587v1
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Does a parthenogenesis-inducing Wolbachia induce vestigial cytoplasmic incompatibility?
Ken Kraaijeveld
,
Barbara M Reumer
,
Laurence Mouton
,
Natacha Kremer
,
Fabrice Vavre
et al.
Journal articles
hal-00746858v1
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Reconciliation of metabolites and biochemical reactions for metabolic networks.
Thomas Bernard
,
Alan Bridge
,
Anne Morgat
,
Sébastien Moretti
,
Ioannis Xenarios
et al.
Journal articles
hal-00764412v1
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Etude structurelle des réseaux : modèles aléatoires, motifs et cycles.
Etienne Birmele
Bio-informatique [q-bio.QM]. Université d'Evry-Val d'Essonne, 2011
Habilitation à diriger des recherches
tel-00750375v1
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A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
Gustavo Akio Tominaga Sacomoto
,
Vincent Lacroix
,
Marie-France Sagot
Workshop on Algorithms in Bioinformatics (WABI) , Sep 2013, Nice, France
Conference papers
hal-00842982v1
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Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development
Andréane Rabatel
,
Gérard Febvay
,
Karen Gaget
,
Gabrielle Duport
,
Nadia Bendridi
et al.
Sixth International Symposium on Molecular Insect Science , 2011, Amsterdam, Netherlands
Conference papers
hal-00748785v1
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Reference-free detection of isolated SNPs
Raluca Uricaru
,
Guillaume Rizk
,
Vincent Lacroix
,
Elsa Quillery
,
Olivier Plantard
et al.
Journal articles
hal-01083715v1
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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms
Julien Allali
,
Cédric Saule
,
Cedric Chauve
,
Yves d'Aubenton-Carafa
,
Alain Denise
et al.
Journal articles
hal-00647725v1
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Exploration et inférence du réseau de régulation de la transcription de la bactérie symbiotique intracellulaire à génome réduit Buchnera aphidicola
Lilia Brinza
Bio-informatique [q-bio.QM]. INSA de Lyon, 2010. Français.
⟨NNT : ⟩
Theses
tel-00750363v1
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Two Host Clades, Two Bacterial Arsenals: Evolution through Gene Losses in Facultative Endosymbionts.
Pierre-Antoine Rollat-Farnier
,
Diego Santos-Garcia
,
Qiong Rao
,
Marie-France Sagot
,
Francisco J Silva
et al.
Journal articles
hal-01139507v1
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Efficient algorithms for the identification of miRNA motifs in DNA sequences
Nuno D Mendes
Bioinformatics [q-bio.QM]. UNIVERSIDADE TECNICA DE LISBOA INSTITUTO SUPERIOR TECNICO, 2011. English.
⟨NNT : ⟩
Theses
tel-00750693v1
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms
Paulo Vieira Milreu
,
Vicente Acuña
,
Etienne E. Birmelé
,
Pierluigi Crescenzi
,
Alberto Marchetti-Spaccamela
et al.
Conference papers
hal-00751339v1
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Diversity and dynamics of Wolbachia-host associations in arthropods from the Society archipelago, French Polynesia
Patrícia Martins Simões
Biodiversité. Université Claude Bernard - Lyon I, 2012. Français.
⟨NNT : ⟩
Theses
tel-00850707v1
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